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Report for CCDS20896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20896.1 Public Mus musculus 7 Rtn2 23 108 98 CCDS HistoryNCBI Gene:20167Re-query CCDS DB by CCDS ID:20896.1Re-query CCDS DB by GeneID:20167See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032559.16 ENSMUSP00000032559.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032559.16Link to Ensembl Protein Viewer:ENSMUSP00000032559.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032559Re-query CCDS DB by Protein ID:ENSMUSP00000032559
Original member Current member NCBI NM_013648.6 NP_038676.1 Accepted alive Link to Nucleotide Sequence:NM_013648.6Link to Protein Sequence:NP_038676.1Re-query CCDS DB by Nucleotide ID:NM_013648Re-query CCDS DB by Protein ID:NP_038676Link to BLAST:NP_038676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038676.1 471 O70622-1 471 100% 0 0

Chromosomal Locations for CCDS 20896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19282832 19282865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19286535 19286579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19286683 19287153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19287247 19287510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293076 19293283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293603 19293741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293848 19293917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19294419 19294465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19295451 19295509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19295716 19295794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGGGCAGGTCCTGCCGGTCTTCGCCCACTGCAAAGAAGCTCCATCTACAGCCTCTTCTACCCCCGATT
CCACGGAAGGAGGGAATGACGACTCAGATTTTCGGGAGCTGCACACAGCCCGGGAATTCTCAGAGGATGA
AGAGGAGGAGACCACATCGCAGGACTGGGGCACCCCCAGGGAGCTGACCTTTTCCTACATTGCCTTCGAC
GGCGTGGTGGGCTCTGGGGGCCGTAGGGACTCAGTTGTTCGTCGTCCCCGGCCCCAGGGACGTTCAGTCT
CAGAACCACGGGACCCACCCCAACAGTCCGGCCTGGGTGACAGCTTGGAAAGCATCCCTAGCCTGAGCCA
GTCCCCAGAGCCAGGGCGCCGCGGTGACCCTGACCCCGTGCCTCCAGCTGAGCGCCCGCTGGAGGAACTG
AGGCTGCGGCTGGACCAGCTTGGCTGGGTTGTCCGGAGTGCGGGATCTGGGGAGGATTCGGCCACCAGCA
GCTCCACCCCTCTGGAAAATGAGGAGCCTGATGGATTGGAGGCCAGCGAGGCTGGAGAAGAGACGAATCT
GGAACTCCGACTTGCTCAGTCTCTACATTTGCAACTTGAGGTCCTGACTCCTCAACTTAGCCCTAGCTCC
GGGACCCCCCAGGCGCATACTCCATCCCCACAAAGATCTCAAGATTCGAACTCCGGTCCTGATGATGAGC
CTCTGCTGAATGTGGTAGAAGAGCATTGGCGGCTGCTGGAGCAGGAGCCAATCACGGCCCAGTGCCTCGA
TAGCACAGACCAATCAGAATTCATGTTGGAGCCGCTCCTTCTAGTGGCAGACCTGTTGTACTGGAAGGAC
ACCAGGACGTCGGGAGCGGTCTTCACGGGCCTCATGGCCTCTCTCCTCTGCCTCCTGCACTTTAGCATCG
TGTCCGTGGCTGCGCACCTGGCCCTGTTGGGTCTCTGCGCCACCATCTCTCTCAGGGTTTACCGCAAAGT
GCTGCAGGCCGTGCACCGGGGCGACGGCACCAACCCTTTCCAGGCCTACCTGGACATGGACCTGACCCTG
ACTCGGGAGCAGACAGAACGTTTGTCCCAGCAGATCGCCTCCCACGTGGTCTCCACAGCCACACAGCTAC
GGCATTTCTTCCTAGTGGAAGACCTGGTGGATTCTCTCAAGCTGGCTCTTCTCTTCTACATCTTGACCTT
TGTGGGAGCCATCTTCAACGGCTTGACTCTTGTCATCCTAGGAGTGGTTGCTTTGTTTACCGTCCCCCTT
CTGTACAGACAACATCAGGCCCAGATTGACCAGTATGTGGGGTTGGTGACCAATCAGTTGAGCCACATCA
AAGCTAAGATCCGAGCTAAGATCCCGGGGACCGGAACCCTTGCCCCAACAGCATCAGTCTCCGGATCCAA
AGCCAAAGCCGAATGA

Translation (471 aa):
MGQVLPVFAHCKEAPSTASSTPDSTEGGNDDSDFRELHTAREFSEDEEEETTSQDWGTPRELTFSYIAFD
GVVGSGGRRDSVVRRPRPQGRSVSEPRDPPQQSGLGDSLESIPSLSQSPEPGRRGDPDPVPPAERPLEEL
RLRLDQLGWVVRSAGSGEDSATSSSTPLENEEPDGLEASEAGEETNLELRLAQSLHLQLEVLTPQLSPSS
GTPQAHTPSPQRSQDSNSGPDDEPLLNVVEEHWRLLEQEPITAQCLDSTDQSEFMLEPLLLVADLLYWKD
TRTSGAVFTGLMASLLCLLHFSIVSVAAHLALLGLCATISLRVYRKVLQAVHRGDGTNPFQAYLDMDLTL
TREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPL
LYRQHQAQIDQYVGLVTNQLSHIKAKIRAKIPGTGTLAPTASVSGSKAKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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