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Report for CCDS20953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20953.1 Public Mus musculus 7 Irgq 23 108 98 CCDS HistoryNCBI Gene:210146Re-query CCDS DB by CCDS ID:20953.1Re-query CCDS DB by GeneID:210146See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049020.8 ENSMUSP00000036699.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049020.8Link to Ensembl Protein Viewer:ENSMUSP00000036699.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049020Re-query CCDS DB by Protein ID:ENSMUSP00000036699
Original member Current member NCBI NM_153134.3 NP_694774.3 Accepted alive Link to Nucleotide Sequence:NM_153134.3Link to Protein Sequence:NP_694774.3Re-query CCDS DB by Nucleotide ID:NM_153134Re-query CCDS DB by Protein ID:NP_694774Link to BLAST:NP_694774.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694774.3 583 Q8VIM9 583 100% 0 0

Chromosomal Locations for CCDS 20953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24531386 24531915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24533266 24534487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGCCTCTGCCTCAGGGTGACGTGACTGCCTTATTCCTGGGGCCTCCCGGCTCGGGAAAGTCCGCCCTGA
TCGCCGCGTTATGCGGTAAGAATGTGGACACGGTAGAGATTCCCGATGGACGGCAGGACTCTGGAGTCCC
CAGCCTGAGAGCTGCGGCTCCGGGCCTCTTCCTGGGTGAGCTGAGTTGCCCACCCGCAGCTCCCGGGCCC
TGGGCGGCGGAGGCCAACTTGCTGGTATTGGTGCTACCAGGATCTGAGGGGAGCGAGGAGCCCTTGACCC
CAGCTCTGGGAGAGGCAGCGCGAGCCGCCCTGGCTAGAGGAACCCCGCTGCTGGCTGTCCGGAATCTGCG
CCCTGGAGATTCCCAGAATGCAGCTAAAGCCCGGGATGAGACTGCAGCCTTGTTGAACAGTGCTGGGTTA
GGAGCTGCGCCTCTCTTTGTGCCGCCGGCGGATTGCAGCAGCAGTGACCGCTGCGAGGAGCTAGAGCGCC
TGCAGGTGGTGCTGCGGACCCAGGCGGAGGCGCTGCAGAGGCTCCTGCCTCCTGCCCAGGATGGCTTCGA
GGTGTTGGGCGCAGCCGAGCTGGAAGCTGTTCGTGAGGCCTTCGAGACCGGTGGCCTGGAGGCGGCGCTG
TCGTGGGTGCGCGCTGGTCTGGAGCGCCTGGGCAGCGCACGACTGGACTTGGCGGTGGCCGGCACCACCA
ATGTAGGCCTTGTGCTAGATATGCTGCTGGGGTTGGATCCTGGAGACCCAGGTGCTGCGCCTGCCTCAGC
ACCCACTGGGCCCACCCCTTATCCTGCTCCAGAGCGCCCCAACGTAGTGCTCTGGACCGTTCCCCTGGGC
CCCACGGCCACATCTCCTGCCGTCACCCCTCACCCAACCCACTACGATGCCCTGATCCTTGTCACCCCCG
GGGCTCCCACAGAGGAGAACTGGGCCCAGGTCCGCTCATTGGTGTCCCCAGATGCTCCACTCGTCGGTGT
GCGCACGGACGGCCAGGGCGAAGATCCACCCGAGGTTCTGGAAGAAGAAAAGGCCCAGAATGCAAGTGAT
GGGAACTCAGGGGATGCACGCAGCGAAGGAAAGAAAGCTGGCATCGGGGACTCGGGGTGCACTGCCGCTC
GGAGCCCGGAGGATGAGCTATGGGAGGTGCTGGAGGAGGCGCCTCCGCCCGTGTTCCCGATGCGGCCCGG
CGGTCTCCCAGGCCTCGGAACCTGGCTCCAGCACGCACTGCCCACAGCTCAGGCCGGAGCTCTGCTGCTG
GCGCTGCCACCTGCAAGTCCCCGGGCGGCGCGGAGGAAGGCGGCTGCGCTACGGGCAGGGGCGTGGAGGC
CAGCCCTGTTGGCTAGCCTGGCGGCGGCCGCCGCCCCAGTACCAGGGCTGGGCTGGGCTTGCGATGTGGC
GCTTCTCCGGGGACAGCTGGCCGAGTGGAGGCGCGCGCTAGGCCTCGAACCCGCGGCCGTAGCACGACGT
GAGCGCGCCTTGGGCCTGGCTCCCGGAGTACTGGCAACGCGCACGCGCTTCCCGGGCCCGGTGACGCGAG
CCGAGGTAGAGGCCAGGCTGGGGTCCTGGGCAGGTGAGGGCACGGCGGGAGGTGCAGCGTTGAGCGCGCT
CTCCTTCCTATGGCCCACGGGTGGTGCTGCGGCAACAGGTGGGCTGGGTTACCGTGCTGCGCACGGTGTA
CTTCTACAAGCCTTAGATGAGATGCTGGCTGATGCGGAGGCGGTGCTGGGACCCCCAGAGCCCAACCAAT
GA

Translation (583 aa):
MPLPQGDVTALFLGPPGSGKSALIAALCGKNVDTVEIPDGRQDSGVPSLRAAAPGLFLGELSCPPAAPGP
WAAEANLLVLVLPGSEGSEEPLTPALGEAARAALARGTPLLAVRNLRPGDSQNAAKARDETAALLNSAGL
GAAPLFVPPADCSSSDRCEELERLQVVLRTQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAAL
SWVRAGLERLGSARLDLAVAGTTNVGLVLDMLLGLDPGDPGAAPASAPTGPTPYPAPERPNVVLWTVPLG
PTATSPAVTPHPTHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGEDPPEVLEEEKAQNASD
GNSGDARSEGKKAGIGDSGCTAARSPEDELWEVLEEAPPPVFPMRPGGLPGLGTWLQHALPTAQAGALLL
ALPPASPRAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAAVARR
ERALGLAPGVLATRTRFPGPVTRAEVEARLGSWAGEGTAGGAALSALSFLWPTGGAAATGGLGYRAAHGV
LLQALDEMLADAEAVLGPPEPNQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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