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Report for CCDS20962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20962.1 Public Mus musculus 7 Cd177 23 108 98 CCDS HistoryNCBI Gene:68891Re-query CCDS DB by CCDS ID:20962.1Re-query CCDS DB by GeneID:68891See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063956.6 ENSMUSP00000064934.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063956.6Link to Ensembl Protein Viewer:ENSMUSP00000064934.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063956Re-query CCDS DB by Protein ID:ENSMUSP00000064934
Original member NCBI NM_026862.3 NP_081138.2 Updated not alive Link to Nucleotide Sequence:NM_026862.3Link to Protein Sequence:NP_081138.2Re-query CCDS DB by Nucleotide ID:NM_026862Re-query CCDS DB by Protein ID:NP_081138
Current member NCBI NM_026862.4 NP_081138.2 Accepted alive Link to Nucleotide Sequence:NM_026862.4Link to Protein Sequence:NP_081138.2Re-query CCDS DB by Nucleotide ID:NM_026862Re-query CCDS DB by Protein ID:NP_081138Link to BLAST:NP_081138.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081138.2 817 Q8R2S8 817 100% 0 0

Chromosomal Locations for CCDS 20962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24744218 24744453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24744834 24744965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24745069 24745254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24746117 24746263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24750306 24750425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24750576 24750695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24751964 24752149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24752263 24752397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24754273 24754398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24754553 24754672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24756150 24756335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24756582 24756722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24757996 24758112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24758330 24758449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24759601 24759786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24759999 24760142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24760235 24760286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGAATTCTATACCAGTGCTGACCCTTCTGGGGGTCACGGCCTTGCTACCCTGTGTCCCAGCTCTGACCT
GCCAGAAAAGCAGCGCACAGGCTGTGAGGAATGTGGCAGAGCTGCCCCTCAGGTGGTGGGGAGCTGGTGA
GAAAACCTGCGAGGTTAGCGAGGGTTGCCAAGACTTGATAATGCTCCTGTATAATGGACCCAAGGTCAAC
TTGGTGATCATCAAGGGCTGCACCGAGGTTGAGGACCAAGAGCCGAAGGTGATCTGGCTCAGGACAGGCC
CTGGGCTCTCTGTGGTGTCCTACACCCGTGTGTGTCGCCATGGTGACCTCTGCAATGATGTGAACAGCAC
TAAGATCCTTGAGGAGCTACCTACACCCACAGTTCCAGGGTCCCTGCGCTGCCCACTCTGCCTTTCTAAT
GACAGCTGTGAGAATGCACCGGAGCAGGTCTGCCCTGTGGGAAGCACACACTGCTACGATGGAGTCCTCA
GGCTCAGGGGAGATGGCATCAGGACCAATCTCAAGGTGCAGGGCTGCATGGCCCAGCCAGACTGCAACCT
GCTTAATGGCACCCAGGCGATTGGGACCTTGTATATGAGCGAAAACTGTGATCTTATAGGTCCACAGGCT
CTGGATTGCAATAGTGGGAGCTTGGAAACTGTGAGGAATGTATCAGATCTGCACTTGAGCTGGACGACTG
GCTGGCAAACCTGTGAGGCTGGCGAGGGGTGTTATGAAACAGTGATGCTAATACAAAATGGACATGAATT
TCACATGGTTCTCACTAAGGGATGTACTAGGGATATGAACAAAAAGGCTCGGCTCACCAGGCATAGAACA
GGCCCAGGGATCTCCATCGTCTCCTACGTGCATGTGTGCCGCGACAGGGACTTCTGTAATGACCTGTCTA
CAACAGACCCTCTTTGGACCCCGCCCCCTGACACAGAGCTAGGGACCCTGCGCTGCCGACACTGCCTTTC
AACCGGCAGCTGTGTGAGTGCATCCGAGCTGGTCTGCCCCGCAGGCAGCACACACTGCTACAGTGGAGTC
CTCAGCCTCAGGGGAGGAGGGGTCATTTCTGATCTGAAGGTACAGGGATGCATATCGCAGTCCCAGCCAG
GATGCAACCTGCTCAACGGTACCCAGACAATCGGACCCGTGGATGTGCGTGAGGACTGCGGTCTTCAGTT
AGATGCTCTGAAATGCCAGCATGGGACGCTGAAGACCATCCAGGATATATCGAAGCTGCCTCTCCAGTGG
ACGGCTGGCCAGAAAATCTGTAATGTGGGTGAAGGCTGCCAAGACACACTGATGTTGATAGAGAACGGAG
AGCAGGTGAACTTGGTTCTCACGAAAGGCTGCACTACCGCAAAGGACCAAGAGGCCAAAGTCACGGAGCA
CAGAACTGGACCAGGGCTGTCTGTCACCTCCTACACCCGAGTGTGCCGTAAAAAAGACTTCTGCAATGAC
CTGTCTACCACAGCCCCTCTCTGGGCTCCACCTCCAGTGACAGCCCCAGGGACCACTCGCTGCCCTCTCT
GCTTTTCTGAACAAGCCTGTGAGAATGCACCGGAGCAGGTCTGCCCTGCAGGCAGCACACACTGCTACAG
TGGAGTCCTCAGCCTCAGGGGAGGAGGGATCATCTCTGATCTGAAGGTGCAGGGCTGTATGTCCCAGCCA
GGATGCAACCTGCTCAACGGTACCCAGACAATCGGACCCGTGGATGTGAGCGAGCGCTGCAGTCCTCCGT
CAGAAACAACAGAGTTGTCCTGTTACAGGGGTGTGATGTTTGAGCTTGGCAATGGCTTTGCGGAGGAACC
TGTCAAGTGGACGGCACCAGGGTCTCAGGTGTGTGCACCTGATGAGATTTGTCAAGAGACGCTGCTGCTC
ATAGACGTAGGACAAAAATCAGCCTTCCTGGGGAGTAAAGGCTGCAGCAGTCCTGGGGCGCAGGACAATA
TTGGTGTCTCCATATTCTCCCGGCTCCCTGGGATGCTGGTAGCTTCCTATACCAAATTCTGTTCTTCCCA
CCTGTGCAATGGAGCCGACAGCAGCAGTGTCCTTCTAAGCATCCTCCCTCGTCCAGATGTTCCTCCCCCA
GGAGATGTGCAGTGCCCCATGTGTGTAGAGTTATTTGGATCCTGCAAGAGCACTGACTCTGTCACCTGCC
CTAGGGGTGCCACTCACTGTTATAAAGGTGACATTGCACTACAGGGAGGTGGACTGACTACCAGAGTGAG
CATTCAGGGGTGCATGGCCCCACCTATCAAACCTTTACTGGGTGACTCCAAAACAATCGGTATCTTCTCG
GCAGAGGAGAGCTCTAACTATCGACATGAGGATGATGTTACCTCGGCCCCTTCCCTGGCCTGGACCTTAC
GGCTATCGGCCTGGATGTTAGGGCTATCGGCTCTTCTCAGCTCTTTGTATGCTGGGATCTGTCCTCTCTG
CTGA

Translation (817 aa):
MNSIPVLTLLGVTALLPCVPALTCQKSSAQAVRNVAELPLRWWGAGEKTCEVSEGCQDLIMLLYNGPKVN
LVIIKGCTEVEDQEPKVIWLRTGPGLSVVSYTRVCRHGDLCNDVNSTKILEELPTPTVPGSLRCPLCLSN
DSCENAPEQVCPVGSTHCYDGVLRLRGDGIRTNLKVQGCMAQPDCNLLNGTQAIGTLYMSENCDLIGPQA
LDCNSGSLETVRNVSDLHLSWTTGWQTCEAGEGCYETVMLIQNGHEFHMVLTKGCTRDMNKKARLTRHRT
GPGISIVSYVHVCRDRDFCNDLSTTDPLWTPPPDTELGTLRCRHCLSTGSCVSASELVCPAGSTHCYSGV
LSLRGGGVISDLKVQGCISQSQPGCNLLNGTQTIGPVDVREDCGLQLDALKCQHGTLKTIQDISKLPLQW
TAGQKICNVGEGCQDTLMLIENGEQVNLVLTKGCTTAKDQEAKVTEHRTGPGLSVTSYTRVCRKKDFCND
LSTTAPLWAPPPVTAPGTTRCPLCFSEQACENAPEQVCPAGSTHCYSGVLSLRGGGIISDLKVQGCMSQP
GCNLLNGTQTIGPVDVSERCSPPSETTELSCYRGVMFELGNGFAEEPVKWTAPGSQVCAPDEICQETLLL
IDVGQKSAFLGSKGCSSPGAQDNIGVSIFSRLPGMLVASYTKFCSSHLCNGADSSSVLLSILPRPDVPPP
GDVQCPMCVELFGSCKSTDSVTCPRGATHCYKGDIALQGGGLTTRVSIQGCMAPPIKPLLGDSKTIGIFS
AEESSNYRHEDDVTSAPSLAWTLRLSAWMLGLSALLSSLYAGICPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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