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Report for CCDS21069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21069.1 Public Mus musculus 7 Yif1b 23 108 98 CCDS HistoryNCBI Gene:77254Re-query CCDS DB by CCDS ID:21069.1Re-query CCDS DB by GeneID:77254See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032809.9 ENSMUSP00000032809.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032809.9Link to Ensembl Protein Viewer:ENSMUSP00000032809.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032809Re-query CCDS DB by Protein ID:ENSMUSP00000032809
Original member Current member NCBI NM_029887.3 NP_084163.2 Accepted alive Link to Nucleotide Sequence:NM_029887.3Link to Protein Sequence:NP_084163.2Re-query CCDS DB by Nucleotide ID:NM_029887Re-query CCDS DB by Protein ID:NP_084163Link to BLAST:NP_084163.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084163.2 311 Q9CX30-1 311 100% 0 0

Chromosomal Locations for CCDS 21069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29238391 29238445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29244070 29244302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29244399 29244503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29244595 29244673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29244782 29244839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29245666 29245821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29245901 29245994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29247237 29247392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCACGCGACAGGTTTGGCGGCGCCGGCGGGGACGCCCCGGCTGCGTAAGTGGCCCTCAAAGCGGAGGG
TCCCAGTGTCCCAACCAGGCATGGCTGATCCCCACCAGTTTTTTGATGACACGAGTTCTGCCCCAAGCCG
GGGCTATGGAGGCCAGCCGTCACCTGGTGGTCTGGGTTACCCCCCCTCTTCATCCGACGCAGCCTTCCTG
GCTGCCCCTATGTCCAACATGGCGATGGTCTACGGGAGCAGCCTGGCCGCTCAGGGCAAGGAGCTGGTAG
ATAAGAATATCGACCGCTTCATCCCCGTCAGCAAGCTCAAGTATTACTTTGCAGTGGACACGGTGTATGT
GGGCAAGAAGCTTGGGCTGCTGGTCTTTCCCTACCTTCACCAGGACTGGGAGGTACAGTACCAACAGGAC
ACCCCAGTGGCCCCCCGCTTCGACATCAATGCTCCAGACCTCTACATTCCAGCCATGGCTTTCATCACCT
ACATCTTGGTGGCCGGCCTTGCACTGGGGACCCAGGACAGGTTCTCCCCAGACCTCCTGGGACTGCAGGC
GAGCTCAGCTCTGGCCTGGCTGACTCTGGAAGTCGTAGCAATCCTGCTCAGTCTCTACCTGGTCACTGTC
AACACCGACCTCACCACCATTGACCTGGTGGCCTTCTTGGGCTACAAATATGTGGGGATGATTGGCGGCG
TCCTCACGGGTCTGCTCTTTGGAAAGATCGGCTACTACCTGGTGCTTGCCTGGTGCTGTGTGTCCATCTT
TGTATTCATGATCCGGACACTGCGGCTCAAGATCCTGGCCCAGGCAGCGGCCGAAGGAGTGCCAGTGCGT
GGGGCGCGGAACCAGCTGCGCATGTACCTGACTATGGCAGTGGCAGCTGCGCAGCCGGTACTCATGTACT
GGCTCACCTTCCACCTTGTACGGTGA

Translation (311 aa):
MHATGLAAPAGTPRLRKWPSKRRVPVSQPGMADPHQFFDDTSSAPSRGYGGQPSPGGLGYPPSSSDAAFL
AAPMSNMAMVYGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQD
TPVAPRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAWLTLEVVAILLSLYLVTV
NTDLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVFMIRTLRLKILAQAAAEGVPVR
GARNQLRMYLTMAVAAAQPVLMYWLTFHLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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