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Report for CCDS21086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21086.1 Public Mus musculus 7 Syne4 23 108 98 CCDS HistoryNCBI Gene:233066Re-query CCDS DB by CCDS ID:21086.1Re-query CCDS DB by GeneID:233066See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054594.14 ENSMUSP00000055874.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054594.14Link to Ensembl Protein Viewer:ENSMUSP00000055874.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054594Re-query CCDS DB by Protein ID:ENSMUSP00000055874
Original member NCBI NM_153577.2 NP_705805.1 Updated not alive Link to Nucleotide Sequence:NM_153577.2Link to Protein Sequence:NP_705805.1Re-query CCDS DB by Nucleotide ID:NM_153577Re-query CCDS DB by Protein ID:NP_705805
Current member NCBI NM_153577.3 NP_705805.1 Accepted alive Link to Nucleotide Sequence:NM_153577.3Link to Protein Sequence:NP_705805.1Re-query CCDS DB by Nucleotide ID:NM_153577Re-query CCDS DB by Protein ID:NP_705805Link to BLAST:NP_705805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705805.1 388 Q8CII8 388 100% 0 0

Chromosomal Locations for CCDS 21086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30314959 30315086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30315262 30315400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30316230 30316373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30316573 30316767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30316843 30317091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30317968 30318042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30318673 30318731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30318824 30319001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGCCCTGGTTCCACCTCTTGGCCGTGAATTCCCGCCAGAGCCTGTGAATTGTCCCCTGGCAGCTCCTA
GAGAGCTGGATGTTGTCGGAGGGACCATCTGCCCTGCACCTGAGGAAGAGACAAGCAGGCCAGAGCAGGT
CCAGGCCTCCTTGGGCCTGCCTGAGCATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCC
TCAAGACTCCCCCTGGCCTCTTCCCATGAGCATCAAGACGGGGGCAAGCCCTGTGAGCACTCTGACTCTG
GTTTGGAAGTACTAGAAGCTGAACAGGACAGTCTACATCTTTGTCTGTTGAGGTTGAACTTCCGGCTGCA
GGACCTGGAACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAG
GCAGAGCTACGAGGGGCCGCTGAGCGCGTGGATGCATTGCTTGCATTTGGTGAGGGCCTGGCAGAGAGGA
GTGAGCCCAGGGCCTGGGCATCCCTGGAGCAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTT
CCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGTGCTTGAGAAGGCCAACCTCCTG
GACCAGGACTTGGAAGTTGAGGGAGACTCAGACGGGCCAGCAGCTGGTGGAGTCTGGGGGCCCTGGGCAC
CCAGTACCTTCCCCACTCCTGCAGAGTTGGAGTGGGACCCAGCAGGGGATGTTGGGGGTCTTGGGCCCTC
AGGGCAAAAGATATCTCGGATACCAGGAGCTCCCTGTGAGCTGTGTGGCTACAGGGGACCCCAGAGCAGT
GGACAGGGCCTTGAGGACCTGCTCTCCTTGGGGCTTGGCCACCGGAAACATTTAGCGGCTCACCATCGAA
GGCGGCTCCGGAAGCCTCAGGACAGGAAGAGGCAAGTATCCCCCAGTCTGCCTGATGCAATGCTGGAAGT
GGATCGCGGGGTCCCAGCTCCTGCATCCAAGCGGCCCCTGACCCTCTTCTTTCTCCTTCTCTTCCTCCTT
CTGGTGGGTGCCACGCTGTTGCTGCCCTTGTCGGGGGTCTCCTGCTGTTCTCATGCCCGGCTGGCTAGGA
CGCCCTACCTGGTGCTCAGTTATGTCAATGGTCTCCCTCCAATCTGA

Translation (388 aa):
MALVPPLGREFPPEPVNCPLAAPRELDVVGGTICPAPEEETSRPEQVQASLGLPEHCMGELKSTESATSP
SRLPLASSHEHQDGGKPCEHSDSGLEVLEAEQDSLHLCLLRLNFRLQDLERGLGSWTLAHNRIVQMQALQ
AELRGAAERVDALLAFGEGLAERSEPRAWASLEQVLRALGTHRDTIFQRLWQLQAQLISYSLVLEKANLL
DQDLEVEGDSDGPAAGGVWGPWAPSTFPTPAELEWDPAGDVGGLGPSGQKISRIPGAPCELCGYRGPQSS
GQGLEDLLSLGLGHRKHLAAHHRRRLRKPQDRKRQVSPSLPDAMLEVDRGVPAPASKRPLTLFFLLLFLL
LVGATLLLPLSGVSCCSHARLARTPYLVLSYVNGLPPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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