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Report for CCDS21131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21131.1 Public Mus musculus 7 Scgb2b20 23 108 98 CCDS HistoryNCBI Gene:494519Re-query CCDS DB by CCDS ID:21131.1Re-query CCDS DB by GeneID:494519See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179248.1 ENSMUSP00000137484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179248.1Link to Ensembl Protein Viewer:ENSMUSP00000137484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179248Re-query CCDS DB by Protein ID:ENSMUSP00000137484
Original member Current member NCBI NM_001009952.2 NP_001009952.2 Accepted alive Link to Nucleotide Sequence:NM_001009952.2Link to Protein Sequence:NP_001009952.2Re-query CCDS DB by Nucleotide ID:NM_001009952Re-query CCDS DB by Protein ID:NP_001009952Link to BLAST:NP_001009952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009952.2 112 Q9JI02 112 99.1071% 0 1

Chromosomal Locations for CCDS 21131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 33364505 33364600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33365593 33365774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33366240 33366300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGAAGGGGACACTTCTTCTGCTGGGCTTGCTGGTGACTGGAGAACTGAGCTTCCAGACAACAGAAGCAT
GTCTTCCTTTCTTCGAAGGCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAGAACTCCA
GGCATTCAATGCTACTGCAGAGGAAAAGGTGGCCTTGGAAAAAATTCAGGACTGCTACAGTGAGGAAAGA
ATAAGAAATATACTTCTGGAACCCAAAATTATGGAAGCCATGGTTGCCAGCCCTGAATGCCTGTCATACT
ATGGTCTTGACAATATAAGATCCATTTTAGACTATATTTCCAAGCTATTAGGAGAATAG

Translation (112 aa):
MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCYSEER
IRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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