NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21269.1 Public Mus musculus 7 Tmem143 23 108 98 CCDS HistoryNCBI Gene:70209Re-query CCDS DB by CCDS ID:21269.1Re-query CCDS DB by GeneID:70209See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069772.15 ENSMUSP00000070405.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069772.15Link to Ensembl Protein Viewer:ENSMUSP00000070405.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069772Re-query CCDS DB by Protein ID:ENSMUSP00000070405
Original member Current member NCBI NM_144801.2 NP_659050.2 Accepted alive Link to Nucleotide Sequence:NM_144801.2Link to Protein Sequence:NP_659050.2Re-query CCDS DB by Nucleotide ID:NM_144801Re-query CCDS DB by Protein ID:NP_659050Link to BLAST:NP_659050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659050.2 458 Q8VD26-1 458 99.7817% 0 1

Chromosomal Locations for CCDS 21269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45897079 45897101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45897435 45897666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45899632 45899736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45906918 45907112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45908107 45908237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45909322 45909601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45916083 45916272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45916411 45916631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGACAGTCGCGCGTTGGTTAAGGCTCTGGGAAAGGGGGCAGGCCATGTTGCATGTGACCTGGGGGTCCA
AGGTCCGACTATGGTCCCTGGTGCCTGCTCTCCTCGGGACTCCCCGAGCTCTGTCGTCCCTGGAGAACAG
GATGGGGGTGTACCGCAAGATGTGGAACCCCAAGGAGCCCTGCGACTGGGCCCAGCAGTACCGCGAGCGC
TTCATTCCATTCTCCAAGGAGCAGCTGCTCCGCCTCCTGATACAGGAGTTCCACTCCAGCCCAGCGGAGA
GAGCAGCTTTGGAGGCATTCTCAGCTCACGTGGACTTCTGTACCCTCTTTCACTACCATCAGCTCCTGGC
CAGGCTGCAGGCCTTGTATGACCCCATCAACCCCGACAGGGAGACCCTGGACCAGCCGTCCCTTACTGAC
CCCGAGCGCCTGTCCAGTGAGAAGGATGTGCTCCAGGCTCTGAGGCCCCTGCTGGCCCAGGCCAACTTCT
CTCCACTCTCTGAAGATGCCCTGGCTTATGCACTAGTCGTCCATCATCCTCAGGATGAGGTCCAGGTGAC
AATAAATTTGGATCAGTATATCTACATACAGTTCTGGGCCCTGGGCCAGAGAGTTGGGCAGATGCCCCAC
AAGTCCAGTGTGGGCTCCAAGCGTGGCTTCTTCAGAAAGTTGCCCCCTGTGGAGAGGAGATACTTCAAGC
GTGTGGTGTTGGCTGCCCGGACGAAAGGAGGGCACCTGGTCCTGAAGAGCTTCAAGGATACCCCGCTGGA
GGGCTTAGAGCAGCTGCTGCCGGAGCTGAAGGTGCGCACGCCCGTGCTGCAGCGCGCCCTGCTCAACCTC
ATGTTGGTGGTCTCAGGCGTCATGATCTTCGTCAACGTGGGCATGGTGATACTGTCTGACCTCAAGATGG
CCACCTCCCTGCTGCTGCTGCTCTTTGCTGCCTTCATGGGCGTGAAGGCCTCCAAGGTGTTTGGGCAGCG
CCGCAGTGCCCAGGCGCTGGAGCTGGCACACGTGCTGTACTACCGAAGCACGTCCAACAACTCAGAACTG
CTCAGTGCCCTGGCACTCCGAGCCCAGGAGGAACATATCAAGGAAGCCCTCCTGGCTCACAGCTTCCTAG
CCCGCCGGCCAGGGGGCTCCCAAGGCAAACCTGAAGAGACCTCCAGGTGGCTGCAGTCTGAAGTGGAAAG
CTGGCTTCTGGCCCAATCAGGCTGTGATGTAACCTTCAATGGACCTCGGGCCCTGGCCCATCTGCAAGCC
CTGACCCCCAGCCTTGGACTGTTCCCACCACCTGAATTGCCACAACTGGACCCAATGGTCCTAGGCACTC
CAGAGGCCACGCAGGCTGCGCTGGGTAGCAGCTACCCCTCACCCTGA

Translation (458 aa):
MTVARWLRLWERGQAMLHVTWGSKVRLWSLVPALLGTPRALSSLENRMGVYRKMWNPKEPCDWAQQYRER
FIPFSKEQLLRLLIQEFHSSPAERAALEAFSAHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTD
PERLSSEKDVLQALRPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYIQFWALGQRVGQMPH
KSSVGSKRGFFRKLPPVERRYFKRVVLAARTKGGHLVLKSFKDTPLEGLEQLLPELKVRTPVLQRALLNL
MLVVSGVMIFVNVGMVILSDLKMATSLLLLLFAAFMGVKASKVFGQRRSAQALELAHVLYYRSTSNNSEL
LSALALRAQEEHIKEALLAHSFLARRPGGSQGKPEETSRWLQSEVESWLLAQSGCDVTFNGPRALAHLQA
LTPSLGLFPPPELPQLDPMVLGTPEATQAALGSSYPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH