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Report for CCDS21276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21276.1 Public Mus musculus 7 Ush1c 23 108 98 CCDS HistoryNCBI Gene:72088Re-query CCDS DB by CCDS ID:21276.1Re-query CCDS DB by GeneID:72088See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009667.11 ENSMUSP00000009667.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009667.11Link to Ensembl Protein Viewer:ENSMUSP00000009667.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009667Re-query CCDS DB by Protein ID:ENSMUSP00000009667
Original member Current member NCBI NM_153677.2 NP_710143.2 Accepted alive Link to Nucleotide Sequence:NM_153677.2Link to Protein Sequence:NP_710143.2Re-query CCDS DB by Nucleotide ID:NM_153677Re-query CCDS DB by Protein ID:NP_710143Link to BLAST:NP_710143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_710143.2 910 Q9ES64-1 910 99.7802% 0 2

Chromosomal Locations for CCDS 21276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46195657 46195734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46196712 46196820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46197196 46197251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46198353 46198462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46200974 46201073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46201369 46201422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46201633 46201674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46204130 46204180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46205194 46205313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46208850 46209332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46209864 46209980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46211159 46211311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46214931 46214980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46219299 46219423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46220449 46220514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221393 46221535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221641 46221697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221849 46221908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46222818 46222902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46224838 46224932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225184 46225241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225410 46225434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225543 46225651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46229203 46229341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46229454 46229597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46230064 46230131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46238429 46238464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGACCGGAAGGTGGCCCGAGAATTCCGACACAAGGTGGATTTTCTCATTGAAAATGACGCAGAGAAGG
ACTATCTTTATGATGTGCTGCGGATGTATCACCAGACCATGGATGTGGCTGTGCTCGTGGGAGACCTGAA
GCTGGTCATCAATGAACCCAACCGCCTGCCGCTGTTTGATGCCATTCGACCCCTGATCCCACTGAAGCAC
CAGGTGGAGTATGACCAGCTGACACCCCGACGCTCCAGGAAACTGAAGGAGGTACGCTTGGACCGTCTGC
ACCCAGAAGGTCTCGGCCTCAGCGTGCGTGGAGGCCTGGAATTTGGCTGTGGACTCTTTATCTCCCACCT
CATCAAAGGTGGCCAGGCAGACAGCGTTGGGCTTCAGGTAGGGGATGAAATTGTCCGGATCAACGGCTAT
TCCATCTCTTCCTGTACCCATGAGGAAGTCATCAACCTGATCCGCACCAAGAAGACCGTGTCCATCAAAG
TGAGACACATCGGACTGATCCCTGTGAAGAGCTCTCCTGAGGAGTCCCTCAAATGGCAGTATGTGGATCA
GTTCGTGTCGGAATCTGGGGGTGTGCGAGGTGGCTTGGGCTCACCTGGCAATCGGACAACCAAGGAGAAG
AAGGTGTTTATCAGTCTAGTGGGCTCTCGGGGCCTGGGCTGCAGCATCTCCAGTGGCCCCATCCAGAAGC
CTGGCATCTTCGTCAGCCACGTGAAGCCTGGCTCCCTGTCTGCAGAGGTGGGGTTAGAGACAGGAGACCA
GATTGTGGAAGTCAACGGCATAGACTTCACCAACCTGGACCACAAGGAGGCTGTGAATGTCCTGAAGAGC
AGCCGCAGCCTGACCATCTCCATCGTTGCTGGAGCCGGCCGGGAGCTGTTCATGACGGACCGGGAACGGC
TGGAGGAGGCACGGCAGCGTGAGCTGCAACGGCAGGAACTCCTCATGCAGAAGCGGCTGGCCATGGAGTC
CAACAAGATCCTCCAGGAGCAGCAGGAGATGGAGCGCCAGAGGAGAAAGGAGATCGCCCAGAAGGCTGCC
GAGGAGAATGAGAGATACCGGAAGGAGATGGAACAGATCTCGGAGGAGGAAGAGAAGTTTAAGAAGCAGT
GGAAAGAAGACTGGGGTTCAAAGGAGCAGCTCATTCTGCCTAAGACCATCACCGCAGAGGTGCACCCGGT
GCCCCTTCGCAAGCCCAAGTCTTTTGGGTGGTTTTACCGTTACGATGGCAAATTCCCAACCATCCGGAAG
AAAGCAAAAGAGAAGAAGAAAGCCAAGTACGATAGCCTGCAGGACCTGAGGAAGAACAAGAAGGAACTCG
AGTTTGAACAAAAGCTCTACAAAGAGAAGGAAGAGATGCTGGAGAAGGAGAAGCAGCTCAAGATCAACCG
GCTGGCCCAGGAGGTGTCTGAGACTGAGCGGGAAGACCTTGAGGAATCGGAAAAGACTCAGTATTGGGTG
GAGAGGCTCTGTCAGACGCGCCTCGAGCAGATTTCCTCTGCAGAGAATGAGATTCCTGAGATGACCACAG
GGCCCCCACCTCCCCCACCTTCTGTGTCTCCTCTGGCCCCACCCTTGAGACGATTCGCTGGTGGGATCCA
CCTCCACACCACTGACCTGGATGACATCCCCTTGGACATGTTCTACTACCCCCCCAAGACTCCCTCAGCA
CTGCCCGTGATGCCCCACCCTCCATCTGTCAACCCACCTTCCAAGGTCCCCGCGCCCCCTGTGCTTCCCT
CATCAGGTCACGTGAGCAGCTCATCCTCACCATGGGTGCAACGCACTCCTCCCCCAATCCCCATTCCTCC
GCCTCCATCCATTCCCACCCAAGACCTCACTCCTACCCGCCCATTGCCCTCAGCACTGGAAGAGGCCCTG
GGCAACCACCCCTTCCGCACTGGGGACCCAGGCCATCCAGCAGATGACTGGGAGGCAAACACCCACAGTG
GGAAGCCCTCCAGCTCCCCCACCACTGAGCGGAGCTTCCCACCTGCCCCAAAGACATTCTGCCCAAGCCC
ACAGCCTCCACGAGGCCCTGGCGTGTCCACCATCTCCAAACCCGTCATGGTCCACCAGGAACACAACTTC
GTCTACAGGCCTGCTGTGAAGTCCGAGGTTCTGCCGCAGGAGATGCTGAAGAGGATGGTGGTATATCAGA
CAGCATTCAGACAAGATTTTCGAAAATACGAAGAAGGCTTTGATCCCTACTCCATGTTCTCGCCAGAGCA
GATCGCAGGGAAGGACGTCCGGCTTCTGCGAATCAAGAAGGAGGGGTCTTTAGACTTGGCCCTGGAGGGA
GGCGTGGACTCCCCCGTGGGGAAGGTGGTCGTCTCTGCTGTTTATGAAGGGGGAGCTGCGGAGAGGCATG
GTGGCGTTGTGAAAGGGGATGAGATCATGGCCATCAATGGCAAGATTGTGACGGACTACACCCTGGCTGA
GGCCGAGGCTGCCCTACAGAAGGCCTGGAATCAGGGCGGGGACTGGATAGACCTTGTGGTTGCTGTCTGT
CCCCCTAAGGAGTATGATGACGAGCTCTCTTCTCTTCCCTCCTCTGCAGCCGAAAGCCCCCAGCTGGCCC
GAAAGCAGCTTGAAGCCTATGAGCCCGTGTGTAGACACGGGTTTTTCCTGCAGCTGGAGCCCACGAACCT
TCTTTTAAAGTCCAGAGAGAGAAACCAGACAGACCCATCCTGGAGGCCGGCGAGCTCCGCACCCAGCCCC
TGA

Translation (910 aa):
MDRKVAREFRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPNRLPLFDAIRPLIPLKH
QVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGY
SISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPEESLKWQYVDQFVSESGGVRGGLGSPGNRTTKEK
KVFISLVGSRGLGCSISSGPIQKPGIFVSHVKPGSLSAEVGLETGDQIVEVNGIDFTNLDHKEAVNVLKS
SRSLTISIVAGAGRELFMTDRERLEEARQRELQRQELLMQKRLAMESNKILQEQQEMERQRRKEIAQKAA
EENERYRKEMEQISEEEEKFKKQWKEDWGSKEQLILPKTITAEVHPVPLRKPKSFGWFYRYDGKFPTIRK
KAKEKKKAKYDSLQDLRKNKKELEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESEKTQYWV
ERLCQTRLEQISSAENEIPEMTTGPPPPPPSVSPLAPPLRRFAGGIHLHTTDLDDIPLDMFYYPPKTPSA
LPVMPHPPSVNPPSKVPAPPVLPSSGHVSSSSSPWVQRTPPPIPIPPPPSIPTQDLTPTRPLPSALEEAL
GNHPFRTGDPGHPADDWEANTHSGKPSSSPTTERSFPPAPKTFCPSPQPPRGPGVSTISKPVMVHQEHNF
VYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEEGFDPYSMFSPEQIAGKDVRLLRIKKEGSLDLALEG
GVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC
PPKEYDDELSSLPSSAAESPQLARKQLEAYEPVCRHGFFLQLEPTNLLLKSRERNQTDPSWRPASSAPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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