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Report for CCDS21283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21283.1 Public Mus musculus 7 Saa4 23 108 98 CCDS HistoryNCBI Gene:20211Re-query CCDS DB by CCDS ID:21283.1Re-query CCDS DB by GeneID:20211See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006952.8 ENSMUSP00000006952.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006952.8Link to Ensembl Protein Viewer:ENSMUSP00000006952.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006952Re-query CCDS DB by Protein ID:ENSMUSP00000006952
Original member Current member NCBI NM_011316.4 NP_035446.1 Accepted alive Link to Nucleotide Sequence:NM_011316.4Link to Protein Sequence:NP_035446.1Re-query CCDS DB by Nucleotide ID:NM_011316Re-query CCDS DB by Protein ID:NP_035446Link to BLAST:NP_035446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035446.1 130 P31532 130 100% 0 0

Chromosomal Locations for CCDS 21283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46729522 46729684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46730037 46730175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46731606 46731696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGAGGCTTGCCACCGTCATTGTCCTCTGTTCTTTGTTCCTGGGAGTCAGTGGTGATGGCTGGTATTCAT
TCTTCAGGGAAGCCGTACAAGGGACTTGGGACTTGTGGAGAGCCTATCGGGACAACCTAGAAGCTAATTA
CCAAAATGCAGACCAATACTTCTATGCTCGTGGGAACTACGAGGCCCAACAGAGGGGCTCTGGGGGCATC
TGGGCTGCTAAAATAATCAGCACCAGCAGGAAATACTTCCAGGGCCTCCTAAACCGATATTATTTTGGAA
TCAGGAACCATGGATTGGAAACCCTGCAGGCTACCCAGAAAGCCGAGGAATGGGGCCGCAGTGGCAAAAA
CCCCAATCACTTCCGACCCGAGGGCCTTCCTGAGAAGTTCTGA

Translation (130 aa):
MRLATVIVLCSLFLGVSGDGWYSFFREAVQGTWDLWRAYRDNLEANYQNADQYFYARGNYEAQQRGSGGI
WAAKIISTSRKYFQGLLNRYYFGIRNHGLETLQATQKAEEWGRSGKNPNHFRPEGLPEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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