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Report for CCDS21396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21396.1 Public Mus musculus 7 Hddc3 23 108 98 CCDS HistoryNCBI Gene:68695Re-query CCDS DB by CCDS ID:21396.1Re-query CCDS DB by GeneID:68695See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032747.6 ENSMUSP00000032747.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032747.6Link to Ensembl Protein Viewer:ENSMUSP00000032747.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032747Re-query CCDS DB by Protein ID:ENSMUSP00000032747
Original member NCBI NM_026812.2 NP_081088.1 Updated not alive Link to Nucleotide Sequence:NM_026812.2Link to Protein Sequence:NP_081088.1Re-query CCDS DB by Nucleotide ID:NM_026812Re-query CCDS DB by Protein ID:NP_081088
Current member NCBI NM_026812.3 NP_081088.1 Accepted alive Link to Nucleotide Sequence:NM_026812.3Link to Protein Sequence:NP_081088.1Re-query CCDS DB by Nucleotide ID:NM_026812Re-query CCDS DB by Protein ID:NP_081088Link to BLAST:NP_081088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081088.1 179 Q9D114 179 100% 0 0

Chromosomal Locations for CCDS 21396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80343138 80343249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80343539 80343594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80343716 80343956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80345648 80345778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGCTCGGAGGCAGCTCAGCTGCTGGAGGCTGCTGACTTCGCCGCTCACAAACACCGACAGCAGCGAC
GAAAAGATCCTGAAGGGACTCCCTACATTAATCACCCCATCGGTGTAGCCCGGATCCTAACCCATGAGGC
TGGAATCACTGATATTGTGGTGTTACAGGCCGCCCTGCTCCATGACACAGTAGAAGACACAGATACTACC
CTGGATGAGGTAGAGCTGCACTTTGGAGCACAGGTTCGACGCTTGGTGGAGGAGGTAACAGATGACAAGA
CTCTGCCCAAACTGGAAAGAAAGCGGCAACAGGTGGAGCAGGCACCACACAGCAGCCCAGGGGCCAAACT
GGTGAAGCTGGCAGACAAGCTATACAATCTGAGGGACCTGAATCGCTGCACCCCTACAGGATGGTCAGAA
CACCGAGTCCAGGAGTACTTCGAGTGGGCAGCCCAGGTGGTAAAAGGGCTTCAAGGGACAAACCAGCAAC
TGGAAGAGGCACTAAAGCAGCTGTTCGAGGAGCGAGGGCTGACGCTCTGA

Translation (179 aa):
MGSEAAQLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTT
LDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPTGWSE
HRVQEYFEWAAQVVKGLQGTNQQLEEALKQLFEERGLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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