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Report for CCDS21555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21555.1 Public Mus musculus 7 Or51a6 23 108 98 CCDS HistoryNCBI Gene:259118Re-query CCDS DB by CCDS ID:21555.1Re-query CCDS DB by GeneID:259118See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084812.2 ENSMUSP00000081873.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084812.2Link to Ensembl Protein Viewer:ENSMUSP00000081873.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084812Re-query CCDS DB by Protein ID:ENSMUSP00000081873
Original member Current member NCBI NM_147114.2 NP_667325.1 Accepted alive Link to Nucleotide Sequence:NM_147114.2Link to Protein Sequence:NP_667325.1Re-query CCDS DB by Nucleotide ID:NM_147114Re-query CCDS DB by Protein ID:NP_667325Link to BLAST:NP_667325.1

Chromosomal Locations for CCDS 21555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102954664 102955620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCTTGTGAAGTCTTCTATCATGTCCGTTCTCAATTCTTCAGAAATTGAGATCACCACCTTCTTCCTGA
TTGGAATCCCAGGCCTGGAGTATGCTCATGCGTGGATCTCCATTCCCATCTGCCTCATGTACCTGGTGGC
CATCCTGGGCAACTGCACCATCCTTTTTGTGATCAGGACTGAACCCTCACTCCATGCTCCCATGTACTAT
TTCCTTTCCATGTTGGCCATCTCTGACTTGGGCCTGTCCCTTTCCTCCCTCCCCACCATGCTCCGGATCT
TTGTGTTCAATGCCACAGGAATCTCCCCAAATGCCTGCTTTGCTCAAGAATTCTTTATCCATGGCTTCAC
TGACATGGAGTCCTCAGTGCTTCTGATTATGTCTTTTGACCGCTTCTTGGCCATACGCAACCCCCTCAGA
TACAGCTCTATCCTCACCAGTGCAAGAGTCGCCAAAATGGGACTGGTGTTTCTCATTAAAAGCATGCTCC
TAGTGCTCCCATTTCCTTTCACTCTGAAAAGACTGGCATATTGTCAGAAAAGCCTCCTTTCTCACTCCTA
TTGTCTCCATCAGGATGTCATGAAGCTGGCCTGCTCTGACAACACAGTCAACTTTTTCTATGGTTTTTTT
GTTGCACTCTGTATGATGTCAGACAGTATGTTCATTGCTGTCTCTTACATATTCATCCTGAAGACCGTGA
TGGGCATTGGATCCCATAAAGAGCGCCTCAAGGCCCTCAATACCTGTGTCTCCCACATCTGTGCTGTGCT
CATCTTCTATGTACCTATCATTGCTTTAGCATCCATGCACCGCTTTGGCAAGCACAAGTCACCTATGGCC
ATGATCCTTATTGCTGACATCTTCTTGCTAGTGCCACCTTTGATGAATCCCATTGTGTACTGTGTAAAGA
CACGGCAAATTCGTGAAAAGGTTCTAGGAAAATTAGGTCTAAAATAA

Translation (318 aa):
MLVKSSIMSVLNSSEIEITTFFLIGIPGLEYAHAWISIPICLMYLVAILGNCTILFVIRTEPSLHAPMYY
FLSMLAISDLGLSLSSLPTMLRIFVFNATGISPNACFAQEFFIHGFTDMESSVLLIMSFDRFLAIRNPLR
YSSILTSARVAKMGLVFLIKSMLLVLPFPFTLKRLAYCQKSLLSHSYCLHQDVMKLACSDNTVNFFYGFF
VALCMMSDSMFIAVSYIFILKTVMGIGSHKERLKALNTCVSHICAVLIFYVPIIALASMHRFGKHKSPMA
MILIADIFLLVPPLMNPIVYCVKTRQIREKVLGKLGLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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