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Report for CCDS21640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21640.1 Public Mus musculus 7 Or56a3 23 108 98 CCDS HistoryNCBI Gene:259046Re-query CCDS DB by CCDS ID:21640.1Re-query CCDS DB by GeneID:259046See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098158.4 ENSMUSP00000095761.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098158.4Link to Ensembl Protein Viewer:ENSMUSP00000095761.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098158Re-query CCDS DB by Protein ID:ENSMUSP00000095761
Original member Current member EBI ENSMUST00000215704.1 ENSMUSP00000149116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215704.1Link to Ensembl Protein Viewer:ENSMUSP00000149116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215704Re-query CCDS DB by Protein ID:ENSMUSP00000149116
Original member Current member EBI ENSMUST00000214328.2 ENSMUSP00000150668.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214328.2Link to Ensembl Protein Viewer:ENSMUSP00000150668.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214328Re-query CCDS DB by Protein ID:ENSMUSP00000150668
Original member Current member NCBI NM_147044.1 NP_667255.1 Accepted alive Link to Nucleotide Sequence:NM_147044.1Link to Protein Sequence:NP_667255.1Re-query CCDS DB by Nucleotide ID:NM_147044Re-query CCDS DB by Protein ID:NP_667255Link to BLAST:NP_667255.1

Chromosomal Locations for CCDS 21640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105085718 105086665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGACAGCACACAAGAACGACACCAACCCTACTGGAGTTTCAGACTTCCTCCTAAATTGTTTTGTCAGGT
CTCCCAGCTGGCAGCTCTGGCTCTCCCTGCCACTCAGCCTTCTCTTCCTCCTAGCCATGGGGGCTAATGC
TATTCTTCTGATCACCATCCGGATGGAGGCCTCTCTGCATGAACCCATGTACTACCTGCTCAGCCTCCTC
TCCATGCTGGACATCATACTCTGCCTCACTGTCATCCCCAAGGTACTAGCCATCTTCTGGTTTGACCTCA
GAGCCATTGGCTTTCCTGCCTGTTTCCTCCAAATGTATATCATGAACAGCTTTCTTGCTATGGAATCTTG
CACATTTATGATCATGGCCTTCGATCGCTATATAGCCATCTGTCACCCACTGAGATATCCATCCATCATC
ACTGACCAATTTGTAGTCAAGGCGGCCACATTCATTCTGGTCAGGAATGTCCTTATTACTTTGCCCATCC
CCATTCTTTCAGCACGACTCCATTACTGTGGGAGAAATGTTATTGAGAACTGCATCTGTGCCAACATGTC
CGTCTCTAGACTCTCTTGTAATGATGTCAATGTCAACCGTCTTTATCAGTTTGCTATAGGCTGGACTTTG
CTGGGATCAGACCTATTCCTCATCTTCCTCTCTTATACCCTTATACTAAGAGCTGTGCTGAGACTCAAGG
CAGAGGGTGCTGTAGCCAAAGCTCTGAGCACATGTGGCTCTCACTTCATCCTTATTCTGTTTTTTAGCAC
CATCCTTTTGGTTTTTATCCTCACACATGTAGCTAAGAGGAAGGTCTCTTCTGATGTGCCAATCTTGCTC
AATGTCCTCCACCATGTCATCCCTGCTGCCCTTAATCCCATTGTTTATGGGGTAAGAACTCAGGAGATTA
AGCAAGGAATCAAGAAATTGTTGAAAAAGGGGTGGTAA

Translation (315 aa):
MTAHKNDTNPTGVSDFLLNCFVRSPSWQLWLSLPLSLLFLLAMGANAILLITIRMEASLHEPMYYLLSLL
SMLDIILCLTVIPKVLAIFWFDLRAIGFPACFLQMYIMNSFLAMESCTFMIMAFDRYIAICHPLRYPSII
TDQFVVKAATFILVRNVLITLPIPILSARLHYCGRNVIENCICANMSVSRLSCNDVNVNRLYQFAIGWTL
LGSDLFLIFLSYTLILRAVLRLKAEGAVAKALSTCGSHFILILFFSTILLVFILTHVAKRKVSSDVPILL
NVLHHVIPAALNPIVYGVRTQEIKQGIKKLLKKGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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