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Report for CCDS21650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21650.1 Public Mus musculus 7 Cnga4 23 108 98 CCDS HistoryNCBI Gene:233649Re-query CCDS DB by CCDS ID:21650.1Re-query CCDS DB by GeneID:233649See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033187.5 ENSMUSP00000033187.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033187.5Link to Ensembl Protein Viewer:ENSMUSP00000033187.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033187Re-query CCDS DB by Protein ID:ENSMUSP00000033187
Original member Current member NCBI NM_001033317.3 NP_001028489.1 Accepted alive Link to Nucleotide Sequence:NM_001033317.3Link to Protein Sequence:NP_001028489.1Re-query CCDS DB by Nucleotide ID:NM_001033317Re-query CCDS DB by Protein ID:NP_001028489Link to BLAST:NP_001028489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028489.1 575 Q3UW12-1 575 100% 0 0

Chromosomal Locations for CCDS 21650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105404692 105404753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105404889 105404990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105405170 105405276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105405482 105406127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105406801 105407150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105407650 105408110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGAGCCAGGACAGCAAAGTGAAGACAACAGAGTCCACGCCCCCAGCCCCAACCAAAGCCAGGAAGTGGC
TGCCAGTCCTAGACCCATCTGGGGATTATTACTACTGGTGGCTGAACACGATGGTCTTCCCAATCATGTA
TAATCTCATCATCGTTGTATGCAGGGCCTGCTTTCCTGACTTGCAACACAGTTACCTGGTGGCCTGGTTT
GTGCTGGACTACACGAGTGACCTGCTGTACCTACTAGATATTGGGGTACGCTTCCACACAGGATTCCTAG
AACAGGGCATCCTGGTGGTAGACAAAAGCATGATCGCCAGTCGCTATGTACGCACCTGGAGCTTCCTGTT
GGACCTGGCTTCCCTGGTCCCCACAGATGCAGCCTACGTGCAGCTAGGCCCCCACATCCCTACACTCCGG
CTAAACCGCTTTCTCCGAGTGCCTCGCCTCTTTGAGGCTTTCGACCGTACAGAGACCCGCACAGCTTACC
CAAATGCCTTCCGCATAGCCAAGCTGATGATCTACATTTTTGTCGTCATCCATTGGAACAGCTGCTTATA
CTTCGCCCTGTCCAGGTACCTGGGCTTCGGACGGGATGCATGGGTATACCCAGACCCTGCGCAGCCTGGC
TTTGAGCGCTTGCGGCGCCAGTATCTCTACAGCTTCTACTTCTCCACTCTGATCCTGACCACTGTGGGTG
ACACACCGCTGCCAGCCCGAGAGGAAGAGTACCTCTTCATGGTGGGTGACTTCCTGCTGGCCGTCATGGG
TTTCGCCACCATCATGGGTAGCATGAGCTCTGTCATTTACAACATGAACACGGCAGATGCAGCCTTCTAC
CCAGACCATGCTCTGGTAAAGAAATACATGAAGCTACAGCACGTCAACCGAAGGCTGGAGCGGCGCGTTA
TTGACTGGTACCAGCATCTGCAGATCAACAAGAAGATGACCAATGAGGTAGCCATCTTGCAGCACTTGCC
TGAGCGGCTGCGGGCAGAGGTCGCTGTATCCGTACACCTGTCTACCCTGAGCCGAGTACAGATCTTCCAG
AACTGTGAAGCCAGCCTGCTGGAAGAGCTGGTGCTAAAGCTCCAGCCCCAGACCTACTCACCAGGCGAAT
ACGTATGCCGCAAAGGGGACATTGGCCGAGAGATGTACATCATCCGCGAGGGCCAGCTGGCTGTGGTGGC
AGATGACGGTGTCACACAGTATGCTGTGCTTGGTGCAGGGCTCTACTTTGGGGAGATTAGCATCATCAAC
ATCAAAGGGAACATGTCTGGAAACCGACGAACAGCTAACATCAAGAGCCTGGGCTATTCAGACCTCTTCT
GCCTCAGCAAGGAGGATCTACGGGAGGTGCTGAGTGAGTACCCACAGGCCCAGGCAGTCATGGAGGAGAA
GGGCCGTGAAATCTTGCTCAAAATGAATAAATTGGATGTGAATGCTGAGGCAGCTGAGATCGCCCTCCAG
GAGGCCACAGAGTCTCGGCTGAAAGGCCTCGACCAGCAGCTTGATGACCTACAGACCAAGTTTGCTCGCC
TCCTGGCTGAGCTGGAGTCCAGCGCACTGAAGATAGCTTACCGCATTGAAAGGCTGGAGTGGCAGACTCG
AGAGTGGCCGATGCCAGACGACATGGGTGAGGCTGATGATGAGGCTGAGCCTGGAGAAGGAACGTCCAAG
GATGGAGAGGAAAAAGCTGGCCAGGAGGGACCCTCAGGCCTAGAATGA

Translation (575 aa):
MSQDSKVKTTESTPPAPTKARKWLPVLDPSGDYYYWWLNTMVFPIMYNLIIVVCRACFPDLQHSYLVAWF
VLDYTSDLLYLLDIGVRFHTGFLEQGILVVDKSMIASRYVRTWSFLLDLASLVPTDAAYVQLGPHIPTLR
LNRFLRVPRLFEAFDRTETRTAYPNAFRIAKLMIYIFVVIHWNSCLYFALSRYLGFGRDAWVYPDPAQPG
FERLRRQYLYSFYFSTLILTTVGDTPLPAREEEYLFMVGDFLLAVMGFATIMGSMSSVIYNMNTADAAFY
PDHALVKKYMKLQHVNRRLERRVIDWYQHLQINKKMTNEVAILQHLPERLRAEVAVSVHLSTLSRVQIFQ
NCEASLLEELVLKLQPQTYSPGEYVCRKGDIGREMYIIREGQLAVVADDGVTQYAVLGAGLYFGEISIIN
IKGNMSGNRRTANIKSLGYSDLFCLSKEDLREVLSEYPQAQAVMEEKGREILLKMNKLDVNAEAAEIALQ
EATESRLKGLDQQLDDLQTKFARLLAELESSALKIAYRIERLEWQTREWPMPDDMGEADDEAEPGEGTSK
DGEEKAGQEGPSGLE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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