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Report for CCDS21653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21653.1 Public Mus musculus 7 Smpd1 23 108 98 CCDS HistoryNCBI Gene:20597Re-query CCDS DB by CCDS ID:21653.1Re-query CCDS DB by GeneID:20597See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046983.9 ENSMUSP00000042187.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046983.9Link to Ensembl Protein Viewer:ENSMUSP00000042187.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046983Re-query CCDS DB by Protein ID:ENSMUSP00000042187
Original member Current member NCBI NM_011421.2 NP_035551.1 Accepted alive Link to Nucleotide Sequence:NM_011421.2Link to Protein Sequence:NP_035551.1Re-query CCDS DB by Nucleotide ID:NM_011421Re-query CCDS DB by Protein ID:NP_035551Link to BLAST:NP_035551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035551.1 627 Q04519 627 100% 0 0

Chromosomal Locations for CCDS 21653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105554532 105554837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105555222 105555994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105556507 105556678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105556918 105556994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105557350 105557495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105557624 105558033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGCCCCACCACAGAGCATCATCCGGCCAGGACCACCTCAGAGCCGGCTGGGAGCAGAGACTGGAGAGGT
CCTTACCGGCACCCAGAGTGGGACTCCTTTGGATGGGGCTGGGCTTGGCGCTGGTTCTGGCTCTGTTTGA
CTCCACGGTTCTTTGGGTTCCTGCCAGAGCTTATCCTCTTCCTTCTGAAGGCCATTCTGTCAAATTCAGT
GCCATAGCGCCGCCGCTCCAGAGTGCCTTTGGGTGGCAGAACCTCACTTGCCCCGCCTGCAAAGTCTTAT
TCACTGCTCTCAACCATGGGCTGAAGAAGGAGCCCAATGTGGCACGGGTAGGCTCTGTGGCCATCAAGAT
ATGCAAGATGCTGAACATAGCACCACTAGATGTGTGCCAGTCAGCCGTCCATCTCTTTGAGGACGATGTG
GTGGAGGTGTGGACACGTTCAGTTCTGAGCCCATCAGAGGCTTGTGGCTTGCTTCTGGGCTCCTCTTGTG
GACACTGGGACATCTTTTCGACTTGGAACATCTCTTTGCCATCAGTGCCGAAGCCACCCCCAAAGCCACC
GAGCCCACCAGCCCCCGGTGCCCCTGTCAGCCGTGTCCTCTTCCTTACTGATCTACACTGGGACCATGAG
TACCTGGAGGGCACAGACCCTTACTGTGCAGATCCACTTTGCTGCCGCCGGGGGTCCGGATGGCCACCCA
ACTCCCAGAAGGGGGCTGGGTTCTGGGGCGAGTACAGCAAGTGTGACCTGCCCTTGCGAACGCTAGAAAG
CCTGTTGAAAGGACTGGGCCCTGCCGGCCCTTTTGAAATGGTGTACTGGACGGGAGATATCCCTGCCCAT
GATGTCTGGCAACAGTCTCGCCAAGATCAGCTGAGGGCCCTGACCACCATCACAGACCTCGTGAGGAAGT
TCTTGGGCCCAGTGCCAGTGTACCCTGCTGTGGGCAACCATGAGAGCACTCCTGTCAATGGCTTCCCTCC
TCCCTTCATAAAGGGAAACCAATCTTCACAATGGCTCTATGAAGCCATGGCCAAGGCATGGGAACCCTGG
TTACCAGCTGATGCCCTTCACACCCTAAGAATTGGGGGCTTCTATGCCCTCACCCCACGCCCTGGCCTCC
GCCTCATCTCTCTCAATATGAATTTTTGTTCCCGTGAGAACTTTTGGCTCTTGATCAACTCCACAGATCC
TGCTGGACAACTCCAGTGGCTGGTGGAGGAGCTTCAGGCTGCTGAGAATCGAGGAGACAAAGTGCATATA
ATTGGCCACATCCCTCCAGGACATTGTCTTAAGAGCTGGAGCTGGAATTATTACAAAATCATAGCCAGGT
ATGAAAACACTCTGGCCGGTCAGTTCTTTGGCCACACTCACGTGGATGAGTTTGAGATCTTCTATGATGA
GGAAACTCTGAGCCGACCACTAGCTGTAGCCTTCCTGGCGCCCAGTGCTACAACCTTTATCAACCTTAAC
CCTGGCTACCGAGTTTACCAAATAGATGGAAACTACCCCGGAAGCTCTCATGTGGTCCTGGACCACGAGA
CCTACATCTTGAATCTGACCCAGGCCAACGCAGCAGGAGGCACACCAAGCTGGAAGCGCCTCTACAGGGC
TCGAGAAACCTATGGACTTCCAGATGCGATGCCTGCCTCCTGGCACAACCTGGTCTACCGCATGAGGGAT
GATGAGCAACTCTTCCAGACCTTCTGGTTTCTCTACCATAAGGGCCACCCACCTTCAGAGCCCTGCGGCA
CACCCTGCCGCCTGGCCACTCTGTGTGCCCAGCTCTCAGCCCGAGCAGACAGCCCTGCTTTGTGTCGCCA
CTTGATGCCCAATGGGAGCCTCCCAGATGCTAATAGGTTGTGGTCACGCCCCCTGTTGTGCTAG

Translation (627 aa):
MPHHRASSGQDHLRAGWEQRLERSLPAPRVGLLWMGLGLALVLALFDSTVLWVPARAYPLPSEGHSVKFS
AIAPPLQSAFGWQNLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDV
VEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPPPKPPSPPAPGAPVSRVLFLTDLHWDHE
YLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAH
DVWQQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPW
LPADALHTLRIGGFYALTPRPGLRLISLNMNFCSRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHI
IGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSATTFINLN
PGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRD
DEQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARADSPALCRHLMPNGSLPDANRLWSRPLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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