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Report for CCDS21662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21662.1 Public Mus musculus 7 Mrpl17 23 108 98 CCDS HistoryNCBI Gene:27397Re-query CCDS DB by CCDS ID:21662.1Re-query CCDS DB by GeneID:27397See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124482.2 ENSMUSP00000117971.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124482.2Link to Ensembl Protein Viewer:ENSMUSP00000117971.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124482Re-query CCDS DB by Protein ID:ENSMUSP00000117971
Original member Current member NCBI NM_025301.2 NP_079577.1 Accepted alive Link to Nucleotide Sequence:NM_025301.2Link to Protein Sequence:NP_079577.1Re-query CCDS DB by Nucleotide ID:NM_025301Re-query CCDS DB by Protein ID:NP_079577Link to BLAST:NP_079577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079577.1 176 Q9D8P4-1 176 100% 0 0

Chromosomal Locations for CCDS 21662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105809857 105810144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105810450 105810518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105810808 105810981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAGGTTGTCGCTGGCTGCCGCTATCTCCCACGGCCGCGTCTACCGCCGCCTGGGCCTGGGTCCGGAGT
CCCGCATCCATCTGCTGCGGAACTTGCTCACGGGCCTAGTTCGCCACGAACGCATCGAGGCGACATGGGC
ACGCGCGGACGAGATGAGGGGCTACGCGGAGAAGCTCATCGATTATGGAAAGCTGGGCGACACCAACGAA
CGAGCCATGCGTATGGCTGACTTCTGGCTCACAGAGAAGGACTTGATCCCAAAGCTGTTTAAAGTGCTAG
CGCCTCGGTTCCAAGGTCAGAATGGGAACTACACAAGAATGCTACAGATCCCGAATCGGAAGGAGCAAGA
TCGGGCCAAGATGGCGGTGATAGAATATAAAGGGAACTACCTCCCTCCCCTGCCTCTGCCTCACAGAGAC
AGCAACCTTACTCTCCTAAACCAGCTGCTCCTGGGACTGCAGCAGGACCTGCACCATAACCAGGACGCAA
GCCTCCACAGCTCCTGTACAGTTCAAACACCAAAGACTTAA

Translation (176 aa):
MRLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLIDYGKLGDTNE
RAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIPNRKEQDRAKMAVIEYKGNYLPPLPLPHRD
SNLTLLNQLLLGLQQDLHHNQDASLHSSCTVQTPKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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