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Report for CCDS21709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21709.1 Public Mus musculus 7 Or5p64 23 108 98 CCDS HistoryNCBI Gene:258727Re-query CCDS DB by CCDS ID:21709.1Re-query CCDS DB by GeneID:258727See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072968.1 ENSMUSP00000072735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072968.1Link to Ensembl Protein Viewer:ENSMUSP00000072735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072968Re-query CCDS DB by Protein ID:ENSMUSP00000072735
Original member Current member EBI ENSMUST00000211508.2 ENSMUSP00000147652.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211508.2Link to Ensembl Protein Viewer:ENSMUSP00000147652.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000211508Re-query CCDS DB by Protein ID:ENSMUSP00000147652
Original member Current member EBI ENSMUST00000215173.1 ENSMUSP00000149427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215173.1Link to Ensembl Protein Viewer:ENSMUSP00000149427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215173Re-query CCDS DB by Protein ID:ENSMUSP00000149427
Original member Current member NCBI NM_146732.1 NP_666943.1 Accepted alive Link to Nucleotide Sequence:NM_146732.1Link to Protein Sequence:NP_666943.1Re-query CCDS DB by Nucleotide ID:NM_146732Re-query CCDS DB by Protein ID:NP_666943Link to BLAST:NP_666943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666943.1 314 Q8VG02 314 100% 0 0

Chromosomal Locations for CCDS 21709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108255192 108256136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCTTTCCTGGACAATGGGAACCACACTGCAGTGACAGAGTTCATTTTACTTGGATTAACTGATGACC
CATTCCTTAGAATTGTCCTCTTCAGCATCATCCTGTGCATCTACCTGGTGACTGTGTTTGGAAACCTCAG
CACCATCCTTCTCATTAGAGTCTCTTCCCAGCTCCATCACCCCATGTACTTTTTTCTCAGCCACTTAGCT
ACTGTTGACCTAGGCATTTCATCTTCTGTCACTCCCAGTATGCTTGTCAACTTCTTGGCGGAGAGAAGCA
CAATCTCCTACCTTGGATGTGGCATTCAGCTCAGCTCAGCTGCTCTCTTTGGGACACTTGAATGCTTCCT
TCTGGCTGTCATGGCTTATGATCGCTTCATGGCAATCTGCAACCCACTGCTTTATTCTACCAAATTGTCC
ACACGATTCTGTATCCAGTTGGTTGTGGGATCTTATATAGGTGCATTTCTTAATGATTCCTGCTACATCC
TTTCCTTTGCTTTTTTTCTCTTCTGTGGACCAAATAAAGTTGATCACTTTTTCTGTGATTTATCTCCTAT
GATGGAACTCTCCTGTTCTGATGCGAGTGTCTCTGGAGTTGTTATCTCATTTACTGCTGGCTCAATCACT
ATGACCACATTGATTGTTATAGTCATATCTTATTTCTATATCCTCATCACCATCCTAAAGATGCGCTCCA
CTGAGGGTCGCCAAAAAGCCTTCTCCACCTGCACCTCCCACCTCACTGCAGTCACTCTCTACTATGGAAC
TATCATATTCATTTATGTGATGCCAAAGTCCACCTACTCCAGGGACCAGAACAAGGTAGTGTCTCTGTTC
TACATGGTGGTGATCCCAATGTTGAATCCCCTCATCTACAGCCTCAGGAATAATGAAATTAAGGGTGCTC
TGAAGAAGCAATTTTATAGGAAAACATTGTTATAG

Translation (314 aa):
MAFLDNGNHTAVTEFILLGLTDDPFLRIVLFSIILCIYLVTVFGNLSTILLIRVSSQLHHPMYFFLSHLA
TVDLGISSSVTPSMLVNFLAERSTISYLGCGIQLSSAALFGTLECFLLAVMAYDRFMAICNPLLYSTKLS
TRFCIQLVVGSYIGAFLNDSCYILSFAFFLFCGPNKVDHFFCDLSPMMELSCSDASVSGVVISFTAGSIT
MTTLIVIVISYFYILITILKMRSTEGRQKAFSTCTSHLTAVTLYYGTIIFIYVMPKSTYSRDQNKVVSLF
YMVVIPMLNPLIYSLRNNEIKGALKKQFYRKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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