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Report for CCDS21711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21711.1 Public Mus musculus 7 Or5p1 23 108 98 CCDS HistoryNCBI Gene:258731Re-query CCDS DB by CCDS ID:21711.1Re-query CCDS DB by GeneID:258731See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053179.1 ENSMUSP00000061188.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053179.1Link to Ensembl Protein Viewer:ENSMUSP00000061188.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053179Re-query CCDS DB by Protein ID:ENSMUSP00000061188
Original member Current member EBI ENSMUST00000209545.2 ENSMUSP00000148094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209545.2Link to Ensembl Protein Viewer:ENSMUSP00000148094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209545Re-query CCDS DB by Protein ID:ENSMUSP00000148094
Original member Current member EBI ENSMUST00000214605.1 ENSMUSP00000150694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214605.1Link to Ensembl Protein Viewer:ENSMUSP00000150694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214605Re-query CCDS DB by Protein ID:ENSMUSP00000150694
Original member Current member NCBI NM_146736.1 NP_666947.1 Accepted alive Link to Nucleotide Sequence:NM_146736.1Link to Protein Sequence:NP_666947.1Re-query CCDS DB by Nucleotide ID:NM_146736Re-query CCDS DB by Protein ID:NP_666947Link to BLAST:NP_666947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666947.1 310 Q8VG06 310 100% 0 0

Chromosomal Locations for CCDS 21711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108316896 108317828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAACCTGGAAACCACACTGCAGTGACAAAGTTCATCCTTTTGGGGTTAACAGATGATCCTACACTCT
GTGTCATCTTCTTTGTGTTTTTTCTTGGAATATACATTGTCACCTTAGTAGGAAATATCAGCATAATAAA
TTTAGTAAGAAGCTGTCCTCAGCTCCAAACCCCCATGTACATGTTTCTTAGCCATCTGGCTTTTGTGGAC
ATTGGCTATTCAACATCAGTTACACCTATAATGTTAATAGGATTCATTGTACATGAAACAGGCCTCCCTG
TGCATGCCTGTGAAGCACAACTCTGTTCTGTTGTGACTTTTGGGACAGCTGAATGCTTCCTGCTGGCTGC
CATGGCCTATGACAGATATGTTGCTATTTGCTCTCCCTTGCTCTACTCCACACATATGTCTTCCCAAATC
TGTCTCCTCTTAGTTGGGGCATCCTATGTGGGTGGCTGTGTGAATGCATGGACATTTACTGGCTGTTTGT
TAAGTCTGTCCTTTTGTGGACCAAATAAGATAGATCACTTCTTCTGTGATTTCTCCCCTTTGTTGAAACT
TTCATGCTCAGATGTCTCCATTATTGGAATCATCCCCTCTATCTCTGCTGGCTCCATTATTGTAGTGACA
GTGTTTGTCATATCTGTCTCCTACATCTACATCCTTATCACCATCCTGAAGATGCGCTCCACTGAGGGTC
GCCACAAGGCCTTCTCCACCTGCACCTCCCACCTCACTGCAGTCACTCTCTACTATGGAACTATTACTTT
CATTTATGTGATGCCCAAGTCCAGCTACTCAACTAAGCAGAACAGGGTGGTGTCTCTGTTCTACACAGTG
GTGATCCCCATGTTGAATCCCCTCATCTATAGTTTGAGGAACAGAGATGTTAAGGAAGCGCTGAGGAAGG
CAACTCTTAGAATATATTCATAG

Translation (310 aa):
MEPGNHTAVTKFILLGLTDDPTLCVIFFVFFLGIYIVTLVGNISIINLVRSCPQLQTPMYMFLSHLAFVD
IGYSTSVTPIMLIGFIVHETGLPVHACEAQLCSVVTFGTAECFLLAAMAYDRYVAICSPLLYSTHMSSQI
CLLLVGASYVGGCVNAWTFTGCLLSLSFCGPNKIDHFFCDFSPLLKLSCSDVSIIGIIPSISAGSIIVVT
VFVISVSYIYILITILKMRSTEGRHKAFSTCTSHLTAVTLYYGTITFIYVMPKSSYSTKQNRVVSLFYTV
VIPMLNPLIYSLRNRDVKEALRKATLRIYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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