NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21923.1 Public Mus musculus 7 Oat 23 108 98 CCDS HistoryNCBI Gene:18242Re-query CCDS DB by CCDS ID:21923.1Re-query CCDS DB by GeneID:18242See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084500.7 ENSMUSP00000081544.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084500.7Link to Ensembl Protein Viewer:ENSMUSP00000081544.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084500Re-query CCDS DB by Protein ID:ENSMUSP00000081544
Original member Current member NCBI NM_016978.2 NP_058674.1 Accepted alive Link to Nucleotide Sequence:NM_016978.2Link to Protein Sequence:NP_058674.1Re-query CCDS DB by Nucleotide ID:NM_016978Re-query CCDS DB by Protein ID:NP_058674Link to BLAST:NP_058674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058674.1 439 P29758 439 100% 0 0

Chromosomal Locations for CCDS 21923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132558170 132558330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132559646 132559790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132560752 132560865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132561784 132561912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132562587 132562709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132564207 132564334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132566769 132566864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132567066 132567290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132569906 132570104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGCTTTCTAAACTAGCAAGTCTGCAGACCATTGCTGCTCTGCGCCGAGGAGTCCACACCTCAGTCGCCT
CTGCCACGTCTGTTGCCACAAAGAAGACAGAGCAAGGCCCACCATCCTCCGAGTACATTTTTGAACGGGA
ATCTAAATATGGTGCACACAATTACCATCCTTTGCCTGTAGCCCTGGAGAGAGGAAAAGGCATTTATATG
TGGGATGTGGAAGGCAGGCAGTACTTCGATTTCCTGAGTGCTTATGGTGCTGTCAGCCAAGGACACTGCC
ACCCAAAGATCATAGATGCCATGAAGAGTCAGGTGGACAAGCTGACATTAACATCTCGGGCTTTCTATAA
CAATGTCCTTGGTGAATACGAGGAGTACATCACCAAGCTTTTCAACTACAACAAAGTTCTCCCTATGAAT
ACAGGAGTGGAGGCTGGAGAGACTGCATGTAAGCTCGCTCGTCGTTGGGGCTACACCGTGAAAGGCATCC
AGAAATACAAAGCAAAGATTGTTTTTGCTGATGGGAACTTTTGGGGTCGAACACTATCTGCAATCTCCAG
TTCCACAGATCCGACCAGTTATGATGGCTTTGGACCCTTCATGCCAGGCTTTGAAACCATCCCATATAAC
GATCTGCCCGCACTGGAGCGTGCTCTTCAGGATCCAAATGTTGCTGCCTTCATGGTGGAGCCCATCCAGG
GTGAAGCAGGCGTTATCGTTCCGGATCCAGGATACCTGACAGGAGTTCGGGAACTCTGCACCAGGCACCA
GGTCCTGTTTATTGCTGATGAAATACAGACAGGATTGGCCAGAACTGGTAGATGGCTGGCTGTGGATCAT
GAGAATGTCAGACCTGATATGGTTCTTCTTGGGAAGGCCCTTTCTGGCGGTTTATACCCTGTGTCTGCAG
TGCTGTGTGACGATGAGATAATGCTGACCATTAAACCAGGCGAGCACGGCTCCACATACGGCGGAAACCC
ACTAGGCTGCCGAATTGCCATTGCGGCTCTTGAGGTTTTAGAAGAGGAGAATCTTGCTGAGAATGCAGAC
AAGATGGGCGCTATCCTGAGGAAGGAGCTCATGAAGCTGCCCTCTGACGTTGTGACCTCAGTGAGAGGGA
AAGGGTTGCTAAATGCCATTGTCATCAGAGAAACCAAAGACTGTGATGCTTGGAAGGTGTGCCTGCGACT
TCGAGATAACGGGCTTCTGGCCAAGCCAACCCACGGTGATATCATCAGGCTTGCCCCTCCCCTTGTGATC
AAGGAGGATGAGATCCGGGAGTCCGTGGAGATCATCAACAAGACTATCTTGTCCTTCTGA

Translation (439 aa):
MLSKLASLQTIAALRRGVHTSVASATSVATKKTEQGPPSSEYIFERESKYGAHNYHPLPVALERGKGIYM
WDVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKVLPMN
TGVEAGETACKLARRWGYTVKGIQKYKAKIVFADGNFWGRTLSAISSSTDPTSYDGFGPFMPGFETIPYN
DLPALERALQDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDH
ENVRPDMVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENAD
KMGAILRKELMKLPSDVVTSVRGKGLLNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI
KEDEIRESVEIINKTILSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH