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Report for CCDS21925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21925.1 Public Mus musculus 7 Lhpp 23 108 98 CCDS HistoryNCBI Gene:76429Re-query CCDS DB by CCDS ID:21925.1Re-query CCDS DB by GeneID:76429See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033241.5 ENSMUSP00000033241.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033241.5Link to Ensembl Protein Viewer:ENSMUSP00000033241.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033241Re-query CCDS DB by Protein ID:ENSMUSP00000033241
Original member Current member NCBI NM_029609.1 NP_083885.1 Accepted alive Link to Nucleotide Sequence:NM_029609.1Link to Protein Sequence:NP_083885.1Re-query CCDS DB by Nucleotide ID:NM_029609Re-query CCDS DB by Protein ID:NP_083885Link to BLAST:NP_083885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083885.1 270 Q9D7I5-1 270 100% 0 0

Chromosomal Locations for CCDS 21925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132610706 132610830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132630482 132630669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132634001 132634154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132641524 132641587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132642487 132642579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132650258 132650349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132705592 132705688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGCCGCATGGGCTGAGCGGCTGACGGGCGTGCGGGGAGTGCTGCTTGACATCTCCGGGGTGCTATGTG
ATAGCAGCGCAAGCGGTGCAACCGCTATCGCAGGCTCTGTGGAGGCAGTGGCGAGACTGAAACAGTCCCC
GCTGAAAGTGAGGTTCTGTACCAATGAGTCCCAGAAATCCCTGAGAGAGCTGGTGGGGGTGCTTCAGCAG
CTGGGGTTTGACATCTCAGAAGAAGAGGTGACTGCCCCTGCACCAGCCACCTGCCAGATCCTGAAGGAGC
GAGGCCTGCGGCCACACTTGCTTATCCATGAAGGAGTCCGCTCAGAATTTGATGACATCGATATGTCCAA
CCCAAACTGTGTGGTGATTGCGGATGCTGGGGAGGCCTTTTCCTATCAGAACATGAACAGAGCCTTCCAG
GTGCTAATGGAGCTGGAAAACCCCGTGCTCATATCCCTGGGAAAAGGACGCTATTACAAGGAGACCTCTG
GCCTGATGCTGGACGTTGGAGGTTACATGAAGGCGCTCGAGTATGCCTGTGGTATCAAGGCTGAAGTGGT
GGGGAAACCCTCCCCTGAGTTCTTCAAGTCTGCTCTACAAGCCATAGGGGTGGAAGCCCACCAGGCCATC
ATGATTGGCGATGACATCGTGGGTGACGTTGGCGGTGCCCAGCAGTGTGGAATGAGAGCTCTGCAGGTGC
GGACCGGGAAGTTCAGGCCTGGTGATGAGCATCATCCAGAAGTACAGGCAGATGGGTACGTGGACAACCT
TGCGGAGGCTGTGGATCTGCTGCTGAAGTACACGGACAAGTGA

Translation (270 aa):
MAAWAERLTGVRGVLLDISGVLCDSSASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQ
LGFDISEEEVTAPAPATCQILKERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQ
VLMELENPVLISLGKGRYYKETSGLMLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAI
MIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQADGYVDNLAEAVDLLLKYTDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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