NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22016.1 Public Mus musculus 7 Cracr2b 23 108 98 CCDS HistoryNCBI Gene:213573Re-query CCDS DB by CCDS ID:22016.1Re-query CCDS DB by GeneID:213573See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053670.11 ENSMUSP00000055899.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053670.11Link to Ensembl Protein Viewer:ENSMUSP00000055899.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053670Re-query CCDS DB by Protein ID:ENSMUSP00000055899
Original member Current member NCBI NM_001025103.2 NP_001020274.2 Accepted alive Link to Nucleotide Sequence:NM_001025103.2Link to Protein Sequence:NP_001020274.2Re-query CCDS DB by Nucleotide ID:NM_001025103Re-query CCDS DB by Protein ID:NP_001020274Link to BLAST:NP_001020274.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020274.2 394 Q80ZJ8 394 100% 0 0

Chromosomal Locations for CCDS 22016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141463411 141463572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141463650 141463761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141464131 141464293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141464696 141464842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141464939 141465029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141465264 141465356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141465519 141465685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141465766 141465837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141466046 141466223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGCCAGCCCTGGGCTGCCTGGATCTGGGGAGGGCCAGGAGGGAGAGGAGACAACAGGGGTCTCGGCAA
GGCATGGAGTAGAGGTGCTGCAGCAGGCCCAGGAACTCTTCCTACTATGCGACAAGGATGCCAAGGGCTT
CATCACTCGTCAGGATCTGCAGGGTCTGCAGAGTGATCTTCCACTTACGCCTGAACAGCTGGAGGCTGTA
TTTGAAAGTCTGGACCAGGCCCACACTGGCTTCCTCACAGCCCGGGAGTTCTGTCTAGGCCTGGGGAAGT
TTGTGGGGGTGGAGTCGGCCCCAGGTGGGTCCCCCTTGAGGACTTCTGAGGAAACCTTTGAGTCGGGCAC
AGGGGGCTCTCTGGAGGAGGAGGAGGAGGATGTTGAGACATTCTACACTTCCTTGGAGAAGCTAGGAGTG
GCCCGGGTCCTGGGCGAGCAATGGGCTGTGAGAACCCTCTGGGTCGGGCTGCAGCGCGAGCGACCTGAGC
TGTTGGGCTCTCTAGAGGAAGTTCTGATGCGCGCATCGGCCTGCCTGGAGGCGGCGGCCCGGGAACGCGA
AGGTCTTGAGCAAGCGCTGCGACGGCGGGAGAGTGAACACGAGAGGGAGGTGCGCGGACTGTATGAAGAA
CTGGAGCAGCAGCTCGGGGAGCAGCGACACCGCAGGCAGAGCCAGAACCTACCCCGGGAGGAACAGAGGG
GCCACCTGGAGCTGGAGCTGCAGACCCGTGAGCAGGAGTTGGAGCGCGCAGGCCTGAGGCAGCGGGAGCT
GGAACAGCAGCTGCAGGCCCGGGCTGCAGAACAGCTAGAGGCACAGGCCCAGCACATCCAGCTGCAGAGG
GCCTATGAGGCCATACGGGCACAGCTGGACCAGGCCCAAGAGCAGCTCAGTCGACTGGAGGGCGAAGCAC
AGGGTCGGCAGGAGCAAACCCAAAGAGATGTGGTTGCTGTCTCCAGGAATATGCAGAAAGAGAAACTCAG
CCTCCTAAGGCAGCTGGAGCTGCTGAGGGAGCTGAATCTGAGGCTTCGAGATGAGAGAGATGCCTGTGAG
ACCAAGCTGCTGGGCAGTAGCCACAGGAAGGCTCTAGCTATTGCCCACAAGCCCGGACCCATCTACTGCT
GCTGCTGCTGTGGCTGGGCTCGGCCCCCCAGACGAGGCTCTGGCCATCTTCCTAGTGCCCGATGA

Translation (394 aa):
MASPGLPGSGEGQEGEETTGVSARHGVEVLQQAQELFLLCDKDAKGFITRQDLQGLQSDLPLTPEQLEAV
FESLDQAHTGFLTAREFCLGLGKFVGVESAPGGSPLRTSEETFESGTGGSLEEEEEDVETFYTSLEKLGV
ARVLGEQWAVRTLWVGLQRERPELLGSLEEVLMRASACLEAAAREREGLEQALRRRESEHEREVRGLYEE
LEQQLGEQRHRRQSQNLPREEQRGHLELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQR
AYEAIRAQLDQAQEQLSRLEGEAQGRQEQTQRDVVAVSRNMQKEKLSLLRQLELLRELNLRLRDERDACE
TKLLGSSHRKALAIAHKPGPIYCCCCCGWARPPRRGSGHLPSAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH