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Report for CCDS22190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22190.1 Public Mus musculus 8 Gins4 23 108 98 CCDS HistoryNCBI Gene:109145Re-query CCDS DB by CCDS ID:22190.1Re-query CCDS DB by GeneID:109145See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033950.6 ENSMUSP00000033950.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033950.6Link to Ensembl Protein Viewer:ENSMUSP00000033950.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033950Re-query CCDS DB by Protein ID:ENSMUSP00000033950
Original member Current member NCBI NM_024240.6 NP_077202.1 Accepted alive Link to Nucleotide Sequence:NM_024240.6Link to Protein Sequence:NP_077202.1Re-query CCDS DB by Nucleotide ID:NM_024240Re-query CCDS DB by Protein ID:NP_077202Link to BLAST:NP_077202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077202.1 223 Q99LZ3 223 100% 0 0

Chromosomal Locations for CCDS 22190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23227079 23227175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23227249 23227339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23229416 23229504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23229606 23229703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23232605 23232718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23234754 23234840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23236980 23237075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGACGGAGGTTCTGGATCTCCACGGACAGGACTCTGATGGGGGTAGTGAGGAGATGGTCCTAACTCCTG
CAGAGCTCATTGAAAAGCTGGAGCAGGCCTGGATGAATGAAAAGTTTGCCCCTGAGCTCCTGGAAAGCAA
GGCTGAGATTGTCGAATGCGTCATGGAACAGCTTGAGCACATGGAAGAAAATCTCAGAAGAGCCAAGAAG
GGGGATCTGAAGGTCAGCATCCATCGCATGGAGATGGAGAGGATCCGCTATGTCCTCAGCAGCTATTTGC
GGTGTCGACTCATGAAGATAGAGAAGTTTTTCCCTCACATCCTAGAAAAGGAGAAAGTGCGCAGTGAGGG
GGAGCCTTCCAGCCTGTCTCCAGAGGAGTTTGTCTTTGCCAAAGAGTATATGGACCACACGGAGACCCAC
TTTAAAAACGTTGCCTTAAAGCACATGCCTCCCAACCTGCAGAAGGTGGACCTCTTGAGGGCAGTTCCCA
AACCAGACCTAGATTCATACGTGTTTCTGCGAGTGAAAGAACGACAAGAAAACATACTAGTAGAACCAGA
AGCCGATGAGCAGAGAGACTACGTGATTGACTTGGAGGTGGGCTCACAGCACTTGATCCGATACAAAACC
ATCGCACCTCTTGTTGCTTCTGGAGCAGTTCAGCTAATATAA

Translation (223 aa):
MTEVLDLHGQDSDGGSEEMVLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRRAKK
GDLKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSPEEFVFAKEYMDHTETH
FKNVALKHMPPNLQKVDLLRAVPKPDLDSYVFLRVKERQENILVEPEADEQRDYVIDLEVGSQHLIRYKT
IAPLVASGAVQLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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