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Report for CCDS22248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22248.1 Public Mus musculus 8 Trmt9b 23 108 98 CCDS HistoryNCBI Gene:319582Re-query CCDS DB by CCDS ID:22248.1Re-query CCDS DB by GeneID:319582See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147525.8 ENSMUSP00000119912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147525.8Link to Ensembl Protein Viewer:ENSMUSP00000119912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147525Re-query CCDS DB by Protein ID:ENSMUSP00000119912
Original member Current member EBI ENSMUST00000171777.1 ENSMUSP00000127875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171777.1Link to Ensembl Protein Viewer:ENSMUSP00000127875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171777Re-query CCDS DB by Protein ID:ENSMUSP00000127875
Original member NCBI NM_176952.4 NP_795926.2 Updated not alive Link to Nucleotide Sequence:NM_176952.4Link to Protein Sequence:NP_795926.2Re-query CCDS DB by Nucleotide ID:NM_176952Re-query CCDS DB by Protein ID:NP_795926
Current member NCBI NM_176952.5 NP_795926.2 Accepted alive Link to Nucleotide Sequence:NM_176952.5Link to Protein Sequence:NP_795926.2Re-query CCDS DB by Nucleotide ID:NM_176952Re-query CCDS DB by Protein ID:NP_795926Link to BLAST:NP_795926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795926.2 447 Q80WQ4-1 447 100% 0 0

Chromosomal Locations for CCDS 22248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 36498328 36498481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36505552 36505725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36511573 36512588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGATCCTGAAGCTGTGGAACTGGAGAAGCGACATGTGCACAGTGTGTACGAGAACACTGCCCCCTACT
TCACTGACCTGCAGAGCAAAGCCTGGCCGCGTGTCCGCCAGTTCCTGCAGGACCAGAAGCCAGGCAGCCT
CGTCGCTGACATTGGTTGTGGAACTGGAAAGTATCTTAAAGTGAATAGCCAAGTCCATACTCTGGGCTGT
GACTACTGTGGGCCTCTGGTAGAGATTGCCCGGAATAGAGGGTGTGAAGTCATGGTATGTGACAACCTTA
ATCTTCCCTTTAGGGACCAGGGCTTCGATGCTATCATCTCCATAGGAGTCATACATCATTTTTCTACAAA
AGAAAGAAGAATTAGAGCAATAAAGGAAATGGCCAGGGTTTTAGCTCCCGGAGGCCAGTTGATGATTTAT
GTCTGGGCAATGGAACAGAAGAACCGACGCTTTGAGAAACAGGATGTACTTGTGCCGTGGAACAGGGCAC
TCTGTTCCCGGCTGCTGTCAGAATCCCACCAGTCATGGGGTCATCACTGTGAGCATCCCAGGAGCCGAGG
CTTCCAGGGCCCCGGTTCCGTGTGCGGCTGCGCAGTGTGTTTTAAGGGCAGATGTGATTCCAAACGGTCC
CACAGCATGGACTATGGGTCTGCGGTGGCCAGAACCTGCTGCGAAGCTATTTCAAAGGAAGGCGAGCGAG
AGAACGGATTGTATAGCAATTTTGGGAAATCCTTTCGTTCCTGGTTTTTCTCCAGGTCTTTGGATGAATC
AACCCTGAGGAAGCAAATTGAAAGAGTCAGGCCCATGAAAATCCCAGAGGCTTGGGCCAATAGCACCGTG
TCCCAACAGCCTTCCAGACACCCCAGCTTAGACTTGCACGCTCCGGAGCCATTTTCAACAAAAGGACCAA
ACTTAGATGAGGTGTTCGTAGACACATCTTCTCAAAGACACTTGGGCTGGCTGAGAACACCTGGCACATC
AGACAACTTCAGTGGACACAAGGGAGGAGGGAGCAGGAGGAAGGAGGGGGGCAATTTTCTGGACATCACT
GATACCGGGGACAGTGTGGCTGCTAGTAACAGCAGTGATCCTTCTGCCAGAAAAATATTAAGGAGGGTTT
CTGCATTCGACTCCAACGACTCCAACTCAGAAGACTCAAGCTTTTTGGAAGCACAACGGGATGCCACCGA
TTCCAAAGCCTTCATGCGTTACTACCATGTATTTCGGGAAGGTGAGCTCTCCAGCCTGCTGCAGGAGAGT
GTGTCTGAGCTACAGGTTCTGAGCTCCGGCAATGACCATGGTAACTGGTGCATCATTGCAGAGAAAAAGA
GGAGCTGGGATTAA

Translation (447 aa):
MDPEAVELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVHTLGC
DYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKEMARVLAPGGQLMIY
VWAMEQKNRRFEKQDVLVPWNRALCSRLLSESHQSWGHHCEHPRSRGFQGPGSVCGCAVCFKGRCDSKRS
HSMDYGSAVARTCCEAISKEGERENGLYSNFGKSFRSWFFSRSLDESTLRKQIERVRPMKIPEAWANSTV
SQQPSRHPSLDLHAPEPFSTKGPNLDEVFVDTSSQRHLGWLRTPGTSDNFSGHKGGGSRRKEGGNFLDIT
DTGDSVAASNSSDPSARKILRRVSAFDSNDSNSEDSSFLEAQRDATDSKAFMRYYHVFREGELSSLLQES
VSELQVLSSGNDHGNWCIIAEKKRSWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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