NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22333.1 Public Mus musculus 8 Marchf1 23 108 98 CCDS HistoryNCBI Gene:72925Re-query CCDS DB by CCDS ID:22333.1Re-query CCDS DB by GeneID:72925See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072482.12 ENSMUSP00000072302.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072482.12Link to Ensembl Protein Viewer:ENSMUSP00000072302.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072482Re-query CCDS DB by Protein ID:ENSMUSP00000072302
Original member Current member EBI ENSMUST00000110259.7 ENSMUSP00000105888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110259.7Link to Ensembl Protein Viewer:ENSMUSP00000105888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110259Re-query CCDS DB by Protein ID:ENSMUSP00000105888
Original member NCBI NM_001363123.1 NP_001350052.1 Updated not alive Link to Nucleotide Sequence:NM_001363123.1Link to Protein Sequence:NP_001350052.1Re-query CCDS DB by Nucleotide ID:NM_001363123Re-query CCDS DB by Protein ID:NP_001350052
Current member NCBI NM_001363123.2 NP_001350052.1 Accepted alive Link to Nucleotide Sequence:NM_001363123.2Link to Protein Sequence:NP_001350052.1Re-query CCDS DB by Nucleotide ID:NM_001363123Re-query CCDS DB by Protein ID:NP_001350052Link to BLAST:NP_001350052.1
Original member NCBI NM_175188.4 NP_780397.2 Updated not alive Link to Nucleotide Sequence:NM_175188.4Link to Protein Sequence:NP_780397.2Re-query CCDS DB by Nucleotide ID:NM_175188Re-query CCDS DB by Protein ID:NP_780397
Current member NCBI NM_175188.5 NP_780397.2 Accepted alive Link to Nucleotide Sequence:NM_175188.5Link to Protein Sequence:NP_780397.2Re-query CCDS DB by Nucleotide ID:NM_175188Re-query CCDS DB by Protein ID:NP_780397Link to BLAST:NP_780397.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350052.1 285 Q6NZQ8-3 285 100% 0 0
NP_780397.2 285 Q6NZQ8-3 285 100% 0 0

Chromosomal Locations for CCDS 22333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 65967157 65967255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66276662 66276712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66386440 66386519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66418816 66418996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66456053 66456200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66468232 66468530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGCCCCTCCACCAGATTTCTGTAATCCCAGCCCGGGAGACAGCCAGCAATGGGAGAAGTTCAATGGGCA
GAAACAAAGAGAAGAACAAGGAAGTTGAGAATGAAAAGTCCCCAGGGCGATCTGCAAGTCGATCAAGTAA
CATATCAAAAGCAAGCAGCCCAACGACAGGGACAGCTCCCAGGAGCCAGTCAAGGTTGTCTGTCTGTCCA
TCTACTCAGGACATCTGCAGGATCTGTCACTGCGAAGGAGATGAAGAGAGCCCACTCATCACACCCTGTC
GCTGCACAGGAACCTTGCGCTTTGTCCACCAGTCCTGCCTCCACCAATGGATCAAGAGCTCAGACACACG
ATGCTGTGAGCTCTGCAAGTATGACTTCATAATGGAGACCAAGCTCAAGCCCCTTCGGAAGTGGGAAAAG
CTCCAGATGACCACGAGCGAAAGGAGGAAAATATTCTGCTCTGTCACGTTCCACGTCATCGCCGTCACCT
GTGTGGTGTGGTCCTTGTATGTGTTGATAGATCGGACAGCGGAGGAAATCAAGCAAGGTAACGACAATGG
TGTGCTGGAATGGCCATTTTGGACAAAACTGGTTGTGGTGGCTATTGGCTTCACGGGAGGTCTCGTCTTC
ATGTATGTACAGTGTAAAGTCTACGTCCAACTGTGGCGCCGGCTGAAGGCCTACAACCGTGTGATCTTTG
TGCAGAATTGCCCAGACACTGCCAACAAACTGGAGAAGAACTTCCCGTGTAATGTGAACACGGAAATCAA
GGATGCTGTGGTTGTGCCTGTGCCACAGACAGGTTCAAATACACTGCCAACTGCAGAGGGAGCCCCACCT
GAGGTTATACCAGTCTGA

Translation (285 aa):
MPLHQISVIPARETASNGRSSMGRNKEKNKEVENEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCP
STQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKPLRKWEK
LQMTTSERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVF
MYVQCKVYVQLWRRLKAYNRVIFVQNCPDTANKLEKNFPCNVNTEIKDAVVVPVPQTGSNTLPTAEGAPP
EVIPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH