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Report for CCDS22350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22350.1 Public Mus musculus 8 Gmip 23 108 98 CCDS HistoryNCBI Gene:78816Re-query CCDS DB by CCDS ID:22350.1Re-query CCDS DB by GeneID:78816See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036074.14 ENSMUSP00000045676.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036074.14Link to Ensembl Protein Viewer:ENSMUSP00000045676.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036074Re-query CCDS DB by Protein ID:ENSMUSP00000045676
Original member Current member NCBI NM_198101.1 NP_932769.1 Accepted alive Link to Nucleotide Sequence:NM_198101.1Link to Protein Sequence:NP_932769.1Re-query CCDS DB by Nucleotide ID:NM_198101Re-query CCDS DB by Protein ID:NP_932769Link to BLAST:NP_932769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932769.1 971 Q6PGG2-1 971 100% 0 0

Chromosomal Locations for CCDS 22350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69808802 69808820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69809774 69809858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69810630 69810717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69810802 69810859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69811158 69811283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69811368 69811432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69811533 69811640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69813616 69813696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69813782 69813952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69814038 69814175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69814395 69814591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69815434 69815543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69815614 69815691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69816051 69816128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69816209 69816363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69816737 69816925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69817003 69817140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69817233 69817429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69817723 69818110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69820434 69820500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69820597 69820976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2916 nt):
ATGGACTCAGCGGAGACAGAGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGA
GCCTGGACAACCTCGAGATATCATTGGGGAACGTAACTTTTGATCCCCTGGCTGGAGACCCTGTACGCAG
AGAAGACCTGGAGCCTGACAAAGCTGACACAGCCACAGTGGTGACTGAGGAGAACAGTGAAGCCAGTAGT
TGGCGGGATCTCTCCCCAGAAGGTCCTGCACCCCTCACAGAGGAAGAACTGGATTTGCGACTCATTCGGA
CCAAGGGTGGTGTAGATGCTGCCCTGGAGTATGCTAAAGCATGGAGCCGCTATGCCAAGGAACTGCTGGC
CTGGACAGACAAGAGAGCCAACTACGAGCTCGAGTTTGCTAAGAGTATCATGAAGCTCGCTGAGGCTGGC
AAGGTGTCCATTCTCCAGCAGAGCCAAATGCCACTCCAGTACATCTACACCTTGTTTCTGGAGCATGACC
TCAGCCTGGGAGCCCTGGCCCTGGAGACAGTGGCCCAACAGAAGAGAGACTACTACCAGCCTCTGGCGGC
CAAAAGGATGGAAATTGAGAAGTGGAGGAAGGAATTCAAGGAACAGTGGCTGAAGGAGCAGAAGCGCATG
AATGAGGCAGTGCAGGCACTGCGGCGCTCCGAGCTCCAGTACATTCAACGCAGAGAGGACCTGAGGGCAC
GCTCCCAGGGGTCCCCTGAGGACCCTCCTTCCCAGGCATCTCCTGGATCCAACAAGCAACAGGAGCGCAG
ACGGCGCTCCCGAGAGGAGGCACAGGCCAAGGCGCATGAGGCGGAGGCTCTGTACCAGGCCTGTGTCCGG
GAGGCCAATTCTCGCCAGCAGGATCTGGAGACCACCAAGCGGCGGATAGTGTCACATGTGCGCAAGCTGG
TGCTGCAAGGAGACGAAGTGCTTAGGCGGGTGACGCTGGGTCTGTTTGAGCTGCGAGGGGCGCAGGCAGA
GCGAGGACCCCGCTCCTTCTCTGCTCTGGCTGAGTGCTGTGTGCCCTTTGAACCTGGCCAGCGCTACCAG
GAGTTTGTTCGGACACTGCAGCCTGGGGCCCCACCGCCGCCATCTCCGGCCTTCTGCTTCCAGGAGTTCA
CAGCTGTGGTGCACAGTTTCCCTCAGGACACAAAAAAGAAGTTTTCGGGGCCTCTACCTCCAAGGCTGGA
GGAGGAGGGTTCCCCTGAGCCTGGCCCTTGGGAGGTTGCCAGCTTAGGCAGCCAGGGAATCCCAGGCAGT
GATGTGGACAGTGTAGGTGGTGGCAGTGAGTCCCGGTCTTTGGATTCTCCCACTTCCAGCCCAGGTGCTG
GGGCCCGCCGACTTGTAAAGGCTTCGTCCACAGGCACGGAGTCCTCCGATGACTTTGAGGAGCGAGACCC
TGATCTGGGGGATGGGATAGAGAATGGAGTAGGCAGCCCGTTCAGGAAGTGGACACTGTCCACAGCTGCT
CAAACCCACCGACTGCGGCGGCTGCGGGGCCCAGCCAAGTGCAGAGAATGTGAAGCCTTCATGGTCAGCG
GGACAGAATGTGAAGAGTGCTTTTTGACCTGTCACAAGCGCTGCCTGGAGACCCTCCTCATCCTTTGTGG
ACACCGGCGGCTTCCGGCCCGGATGTCCCTCTTTGGGGTTGACTTCCTACAGCTCCCCAGAGATTTCCCT
GAGGAGGTTCCCTTTGTGATTACCAGATGCACAGCTGAGATAGAGCACCGTGCCCTGGGCTTGCAGGGTA
TCTATCGGGTCAGCGGGTCTCGGGTACGTGTGGAGCGGCTGTGCCAGGCCTTTGAGAATGGCCGAGCACT
GGTCGAGCTGTCCGGGAACTCTCCTCACGATATCACCAGCGTTCTCAAGCGATTTCTTCAGGAGCTCACT
GATCCCGTGGTCCCCTTCCACTTGTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTG
GGGACGACCCTGGGACCCCCAACCCCAGCCCTGAGATTATTCGCTCGCTGAAGACCCTCTTGGTGCAGCT
GCCTGACTCTAACTACAGTACCCTGCGACACCTGGTGGCCCATCTGTTCAGGGTGGCTGCTCGGTTTGAA
GAAAACAAGATGTCTGCCAACAATCTGGGAATTGTATTTGGGCCTACACTGCTGCGGCCACCAGATGGAC
CCAGGGCCACCGGTGCCAGCCCTGTGGCCTGTCTGCTGGACTCCGGTCACCAGGCTCAGCTGGTTGAGTT
CCTCATTGTGCACTATGAGCAGATCTTTGGAATGGATGAGCTCCCTCTGGCCTCGGAGCCTCTGACCCAA
GACCCTGGCTTGGCTCCTGCATGCCTTGAATCCAGTCCCCAGCACCCAGCCTCACTTCTTGCCCAAGACA
CACAGCCCCTGACCATAGCCTTGGATTCCAGCCCAGACCCCAAACACCACAGTGCCTTGGAGAAGTGCCC
CGAGGTCACACCTCCTGAGCTTGCAACTCTGCAGAGGGACCAGAGGGAGGAGGAGGTGGAAGACACCAGA
GATGGGGCAGGGGATGGGTCCAGCCACTGCCCTGAGGACTTGGCCCTGGGAGCACAATCCCGGGGCCACT
TCAGCCGCCAGCCAGTGAAGTATTCCCGGGGAGGTGTGAGGCCAGTTACTCATCAACTCTCCAGCCTGGC
TCTGGTGGCCTCCAAGCTGTGTGAGGAGACTCCTGTCACTGTCTCAGCAGTGCACCGAGGTAGTTTGAGG
GTACGAGGTTTGGGCCCTGCTGCTGCCTGCCCTGAAGGCAGCCCCCTGCGCCGGAACCCTCTGCCCAAGC
ACTTTGAGATCACCCAGGAGACAGCCCGACTTCTCTCCAAGCTGAACAGTGATGCTGTGTCCAGGACCAC
CTGTTGTGCTGACCCAGAGCCTGAGGAGTCTGAAGAGCACCTCTGA

Translation (971 aa):
MDSAETELTPAPEGRKRYSDIFQSLDNLEISLGNVTFDPLAGDPVRREDLEPDKADTATVVTEENSEASS
WRDLSPEGPAPLTEEELDLRLIRTKGGVDAALEYAKAWSRYAKELLAWTDKRANYELEFAKSIMKLAEAG
KVSILQQSQMPLQYIYTLFLEHDLSLGALALETVAQQKRDYYQPLAAKRMEIEKWRKEFKEQWLKEQKRM
NEAVQALRRSELQYIQRREDLRARSQGSPEDPPSQASPGSNKQQERRRRSREEAQAKAHEAEALYQACVR
EANSRQQDLETTKRRIVSHVRKLVLQGDEVLRRVTLGLFELRGAQAERGPRSFSALAECCVPFEPGQRYQ
EFVRTLQPGAPPPPSPAFCFQEFTAVVHSFPQDTKKKFSGPLPPRLEEEGSPEPGPWEVASLGSQGIPGS
DVDSVGGGSESRSLDSPTSSPGAGARRLVKASSTGTESSDDFEERDPDLGDGIENGVGSPFRKWTLSTAA
QTHRLRRLRGPAKCRECEAFMVSGTECEECFLTCHKRCLETLLILCGHRRLPARMSLFGVDFLQLPRDFP
EEVPFVITRCTAEIEHRALGLQGIYRVSGSRVRVERLCQAFENGRALVELSGNSPHDITSVLKRFLQELT
DPVVPFHLYDAFISLAKTLHADPGDDPGTPNPSPEIIRSLKTLLVQLPDSNYSTLRHLVAHLFRVAARFE
ENKMSANNLGIVFGPTLLRPPDGPRATGASPVACLLDSGHQAQLVEFLIVHYEQIFGMDELPLASEPLTQ
DPGLAPACLESSPQHPASLLAQDTQPLTIALDSSPDPKHHSALEKCPEVTPPELATLQRDQREEEVEDTR
DGAGDGSSHCPEDLALGAQSRGHFSRQPVKYSRGGVRPVTHQLSSLALVASKLCEETPVTVSAVHRGSLR
VRGLGPAAACPEGSPLRRNPLPKHFEITQETARLLSKLNSDAVSRTTCCADPEPEESEEHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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