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Report for CCDS22411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22411.1 Public Mus musculus 8 Ap1m1 23 108 98 CCDS HistoryNCBI Gene:11767Re-query CCDS DB by CCDS ID:22411.1Re-query CCDS DB by GeneID:11767See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003117.14 ENSMUSP00000003117.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003117.14Link to Ensembl Protein Viewer:ENSMUSP00000003117.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003117Re-query CCDS DB by Protein ID:ENSMUSP00000003117
Original member Current member NCBI NM_007456.5 NP_031482.1 Accepted alive Link to Nucleotide Sequence:NM_007456.5Link to Protein Sequence:NP_031482.1Re-query CCDS DB by Nucleotide ID:NM_007456Re-query CCDS DB by Protein ID:NP_031482Link to BLAST:NP_031482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031482.1 423 P35585 423 100% 0 0

Chromosomal Locations for CCDS 22411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72240202 72240243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72246639 72246795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72249113 72249180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72249749 72249879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72250681 72250828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72251743 72251869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72252835 72252977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72253209 72253280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72253475 72253633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72255697 72255822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72256107 72256182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72256735 72256757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGTCCGCCAGCGCCGTCTACGTACTGGATCTGAAGGGCAAGGTGCTCATCTGCAGGAACTACCGTGGGG
ATGTGGACATGTCAGAGGTGGAGCACTTCATGCCCATTCTGATGGAGAAGGAGGAGGAGGGCATGCTGTC
ACCTATCTTGGCCCATGGTGGCGTTCGTTTCATGTGGATTAAGCACAACAACCTGTACCTGGTCGCCACT
TCAAAAAAGAATGCTTGTGTGTCACTGGTGTTCTCCTTCCTCTACAAGGTGGTACAGGTCTTCTCCGAGT
ACTTTAAGGAGTTGGAGGAGGAGAGCATCCGAGACAACTTTGTCATCATCTACGAGCTGCTAGATGAGCT
CATGGACTTTGGCTACCCGCAGACCACTGACAGCAAGATCTTGCAGGAGTACATCACTCAGGAAGGCCAC
AAGCTGGAAACGGGGGCCCCTAGGCCCCCAGCCACAGTCACCAATGCTGTGTCCTGGCGTTCAGAAGGCA
TCAAGTATCGGAAGAATGAAGTATTCCTGGATGTCATTGAGGCTGTTAACCTCTTGGTCAGTGCCAATGG
CAACGTGCTGCGCAGTGAGATTGTGGGTTCCATCAAGATGCGGGTCTTCCTCTCAGGCATGCCTGAGTTA
CGCCTGGGTCTCAATGACAAGGTCCTCTTCGACAACACAGGCCGAGGGAAGAGCAAGTCAGTGGAGCTGG
AGGATGTGAAATTCCACCAGTGTGTGCGGCTGTCACGTTTTGAGAACGACCGCACTATCTCCTTCATCCC
ACCCGACGGAGAGTTTGAACTCATGTCCTACCGCCTCAACACCCATGTGAAGCCTTTGATCTGGATTGAG
TCCGTGATTGAGAAGCATTCCCACAGCCGCATTGAGTACATGGTCAAGGCCAAGAGCCAGTTCAAGAGGC
GGTCAACAGCCAACAATGTAGAGATCCATATACCAGTCCCCAACGATGCTGATTCACCCAAGTTCAAGAC
TACAGTGGGGAGTGTCAAGTGGGTCCCTGAAAACAGTGAGATCGTGTGGTCCGTCAAGTCCTTTCCGGGT
GGCAAGGAGTACCTGATGCGGGCCCACTTTGGCCTTCCCAGTGTGGAAGCTGAAGACAAGGAGGGAAAGC
CCCCCATCAGCGTCAAGTTTGAGATCCCCTATTTCACTACCTCTGGCATCCAGGTGCGCTACCTGAAAAT
CATTGAGAAGAGTGGGTACCAGGCCCTGCCCTGGGTACGATATATCACACAGAACGGAGATTATCAGCTC
CGGACCCAGTGA

Translation (423 aa):
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVAT
SKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGH
KLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPEL
RLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIE
SVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPG
GKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQL
RTQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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