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Report for CCDS22657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22657.1 Public Mus musculus 8 Marveld3 23 108 98 CCDS HistoryNCBI Gene:73608Re-query CCDS DB by CCDS ID:22657.1Re-query CCDS DB by GeneID:73608See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051430.6 ENSMUSP00000052309.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051430.6Link to Ensembl Protein Viewer:ENSMUSP00000052309.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051430Re-query CCDS DB by Protein ID:ENSMUSP00000052309
Original member Current member NCBI NM_028584.3 NP_082860.2 Accepted alive Link to Nucleotide Sequence:NM_028584.3Link to Protein Sequence:NP_082860.2Re-query CCDS DB by Nucleotide ID:NM_028584Re-query CCDS DB by Protein ID:NP_082860Link to BLAST:NP_082860.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082860.2 376 Q9D956-1 376 99.2021% 0 3

Chromosomal Locations for CCDS 22657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109954131 109954741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109959713 109959840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109961716 109962107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAAAAATACTTCGGGGCACCGTGAGCCCCGGACCCGTCCTAGAGAAAGAGACCCGGACCGGCGCCCGC
ACCCGGACCGAGACCACCACGTCGAGCGGTCGCGGGACCGAGGCGGGGACAGGCACAGGGAGAGGAACGG
TGACGTGAGAGGAAACGGGGACCGTCGGGCGGGCCGGGAACAGAGAACGGACCGAGACCAGCGCCAGGAC
AGACACAGGGACGCGGGCCATCGCGCATCCGAACAAAGAGCCTTGGAGAAGTCCCGTCAAAGCCGTGCGC
GGCCCGAGCCCTGGGGACCCAGTTGGGACGCAGCCCCGACTCCGGGACCCGCACCCTGGGGGCCCCCAGA
GCTGTCGCAGAAGCATGGCCTCGGGCGCCGCGGGTTGGAGAGCGAACGGGCTTCGGAAAGATACGTGCCC
ACCTACTCCGTGCCTGCTCTCCAGGAAGAGGAATATTACCAGTCGGAAGCGGAGGGACTCCTGGATTGCC
ACAAATGCAGATACTTGTGCACAGGGAGAGCCTGCTGCCAGATGCTGGAGGCTCTGCTGAACTTGCTGAT
CTTGGCCTGCAGCTCTGTCTCTTACAATTCCACGGGGGGCTACACGGGCATCACCAGCCTGGGGGGGATT
TACTACTACCAGTATGGAGGGGCTTATAGTGGCTTTGACGGTGCGGACGGGGAGAGAGCCCAGCAGTTGG
ACGTTCAGTTTTACCAGCTCAAGCTGCCTACGGTCACTGCAGCCATGGCCTACAGCGGAGCCCTCATGAC
CTTCTCCTGTCTCACCCTCCTCGCGGGTGCCTTGCGGGTCCCTTGGCACTGTCCACTATGGCTGGTGATT
GAGGGCTTAATGGATGCACTCATTGCTGGGGCCTATGTTCCAGGCTTGTACTTCTTCTTCCAACACCTCT
CTGCCGCCTATAGTTCAGATGTGTGCAAGGAGAGGGAGACCCTGTACCAGAGCAAAGGTTATAGTGGCTT
CAACTGTGGTGTCCATGGGGGAGACATAGGAGCAGGAGTCTTTGCAGCCATGGCCATTGGGGTCTTTGCC
GTGGGAGCTGTCCTGGCCTTTAGGGGTTACCGAAAAGTCAAGAAGCTGAAGGAGAAGCCCACAGAAATGC
TTGAGTTTTAG

Translation (376 aa):
MKNTSGHREPRTRPRERDPDRRPHPDRDHHVERSRDRGGDRHRERNGDVRGNGDRRAGREQRTDRDQRQD
RHRDAGHRASEQRALEKSRQSRARPEPWGPSWDAAPTPGPAPWGPPELSQKHGLGRRGLESERASERYVP
TYSVPALQEEEYYQSEAEGLLDCHKCRYLCTGRACCQMLEALLNLLILACSSVSYNSTGGYTGITSLGGI
YYYQYGGAYSGFDGADGERAQQLDVQFYQLKLPTVTAAMAYSGALMTFSCLTLLAGALRVPWHCPLWLVI
EGLMDALIAGAYVPGLYFFFQHLSAAYSSDVCKERETLYQSKGYSGFNCGVHGGDIGAGVFAAMAIGVFA
VGAVLAFRGYRKVKKLKEKPTEMLEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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