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Report for CCDS22659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22659.1 Public Mus musculus 8 Chst4 23 108 98 CCDS HistoryNCBI Gene:26887Re-query CCDS DB by CCDS ID:22659.1Re-query CCDS DB by GeneID:26887See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109222.3 ENSMUSP00000104845.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109222.3Link to Ensembl Protein Viewer:ENSMUSP00000104845.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109222Re-query CCDS DB by Protein ID:ENSMUSP00000104845
Original member NCBI NM_011998.4 NP_036128.3 Updated not alive Link to Nucleotide Sequence:NM_011998.4Link to Protein Sequence:NP_036128.3Re-query CCDS DB by Nucleotide ID:NM_011998Re-query CCDS DB by Protein ID:NP_036128
Current member NCBI NM_011998.5 NP_036128.3 Accepted alive Link to Nucleotide Sequence:NM_011998.5Link to Protein Sequence:NP_036128.3Re-query CCDS DB by Nucleotide ID:NM_011998Re-query CCDS DB by Protein ID:NP_036128Link to BLAST:NP_036128.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036128.3 388 Q9R1I1 388 99.4845% 0 2

Chromosomal Locations for CCDS 22659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110029814 110030980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGATGCTGTTGAAGAAAGGGAGGCTGCTGATGTTCCTGGGTTCCCAGGTCATCGTTGTAGCTCTCTTCA
TCCATATGTCCGTCCACAGACACCTTTCCCAGAGGGAGGAGTCCAGGAGGCCCGTGCATGTGCTGGTGCT
GTCTTCCTGGCGGTCAGGATCCTCTTTTGTGGGACAGCTTTTCGGGCAGCACCCGGATGTGTTCTACCTG
ATGGAGCCTGCCTGGCATGTGTGGATGACTTTCACCAGCAGCACAGCCTGGAAGCTGCACATGGCTGTGC
GGGATCTTCTGCGTTCCGTCTTCCTGTGTGACATGAGCGTCTTTGATGCCTACATGAACCCAGGCCCCCG
GAAACAGTCCAGCCTCTTCCAGTGGGAGCAAAGCCGGGCCCTGTGCTCAGCGCCTGTGTGTGACTTCTTC
CCTGCCCACGAGATCAGCTCACCCAAGCACTGCAAGCTGCTCTGCGGTCAGCAGCCCTTTGATATGGTGG
AGAAGGCCTGCCGCTCTCACGGCTTCGTGGTACTCAAGGAGGTGCGTTTTCTCAGCCTGCAGGCCCTCTA
TCCACTACTCACGGACCCTTCCCTCAACCTGCACGTCGTGCACCTGGTCCGAGACCCCCGGGCCGTGTTC
CGATCCCGGGAGCACACCACCATAGAACTCATGGTTGACAGTCATATTGTGCTAGGGCAGCATTTGGAAA
CGATCAAGGAGGAAGACCAGCCCTATTATGCCATGAAGATCATCTGCAAAAGCCAGGTGGACATAGTCAA
GGCCATCCAAACCCTCCCTGAAGCTCTGCAGCAGCGCTACCTGTTCCTGAGGTATGAGGACCTGGTTCGG
GCACCCCTGGCCCAGACGACCAGACTATATAAATTTGTGGGGTTGGATTTTTTGCCCCACCTCCAAACAT
GGGTTTACAATGTCACCCGCGGCAAGGGCATGGGTCAGCATGCCTTCCATACTAACGCCAGGAACGCCCT
CAACGTCTCTCAGGCGTGGCGTTGGTCCTTACCTTACGAAAAGGTTTCCCAGCTTCAAGATGCCTGCGGT
GAGGCTATGGATTTGCTGGGATACCTCCAGGTCAGATCTCAACAAGAACAAGGCAACCTGTCCCTGGATC
TTCTGTCCTCCTCCCATATCTTGGGGCAGGTCTTCCGAGAAGGTTAA

Translation (388 aa):
MMLLKKGRLLMFLGSQVIVVALFIHMSVHRHLSQREESRRPVHVLVLSSWRSGSSFVGQLFGQHPDVFYL
MEPAWHVWMTFTSSTAWKLHMAVRDLLRSVFLCDMSVFDAYMNPGPRKQSSLFQWEQSRALCSAPVCDFF
PAHEISSPKHCKLLCGQQPFDMVEKACRSHGFVVLKEVRFLSLQALYPLLTDPSLNLHVVHLVRDPRAVF
RSREHTTIELMVDSHIVLGQHLETIKEEDQPYYAMKIICKSQVDIVKAIQTLPEALQQRYLFLRYEDLVR
APLAQTTRLYKFVGLDFLPHLQTWVYNVTRGKGMGQHAFHTNARNALNVSQAWRWSLPYEKVSQLQDACG
EAMDLLGYLQVRSQQEQGNLSLDLLSSSHILGQVFREG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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