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Report for CCDS22690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22690.1 Public Mus musculus 8 Clec3a 23 108 98 CCDS HistoryNCBI Gene:403395Re-query CCDS DB by CCDS ID:22690.1Re-query CCDS DB by GeneID:403395See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009018.3 ENSMUSP00000009018.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009018.3Link to Ensembl Protein Viewer:ENSMUSP00000009018.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000009018Re-query CCDS DB by Protein ID:ENSMUSP00000009018
Original member NCBI NM_001007223.3 NP_001007224.1 Updated not alive Link to Nucleotide Sequence:NM_001007223.3Link to Protein Sequence:NP_001007224.1Re-query CCDS DB by Nucleotide ID:NM_001007223Re-query CCDS DB by Protein ID:NP_001007224
Current member NCBI NM_001007223.4 NP_001007224.1 Accepted alive Link to Nucleotide Sequence:NM_001007223.4Link to Protein Sequence:NP_001007224.1Re-query CCDS DB by Nucleotide ID:NM_001007223Re-query CCDS DB by Protein ID:NP_001007224Link to BLAST:NP_001007224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007224.1 196 Q9EPW4 196 100% 0 0

Chromosomal Locations for CCDS 22690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 114418086 114418200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114422920 114423003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114425455 114425846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGCAAAGAACGGACTTGTCCTTTGTATCCTGGTGGTCAGCTTACTCCTGGACCAGACCGACGGCTACC
CATCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCA
AGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAAGGAGATGCAAGCTCTGCAGACAGTCTGTCTCCGA
GGCACCAAAGTTCATAAGAAGTGCTACCTTGCTTCAGAAGGCCTCAAGCATTACCACGAAGCCAACGAAG
ACTGCATTTCCAAGGGAGGGACCCTGGTTGTCCCCAGGAATTCCGACGAAATCAATGCCCTTCGAGACTA
TGGTAAGAGGAGTCTGCCAGGTGTCAATGACTTTTGGCTAGGCATAAATGACATGGTCACAGAAGGCAAG
TTCCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGC
GGGAAAACTGTGTCCTGTTCTCCCAGTCAGCTCAGGGGAAATGGAGCGACGAAGCCTGTCGCAGTAGCAA
GCGATACATATGTGAGTTTATCATCCCATAA

Translation (196 aa):
MAKNGLVLCILVVSLLLDQTDGYPSRMKARKHSKRRVKAKDDDLKSQVEKLWREVNALKEMQALQTVCLR
GTKVHKKCYLASEGLKHYHEANEDCISKGGTLVVPRNSDEINALRDYGKRSLPGVNDFWLGINDMVTEGK
FLDVHGFAVSFLNWDRAQPSGGKRENCVLFSQSAQGKWSDEACRSSKRYICEFIIP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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