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Report for CCDS22722.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22722.2 Public Mus musculus 8 Foxf1 23 108 98 CCDS HistoryNCBI Gene:15227Re-query CCDS DB by CCDS ID:22722.2Re-query CCDS DB by GeneID:15227See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22722.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22722.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181504.1 ENSMUSP00000137662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181504.1Link to Ensembl Protein Viewer:ENSMUSP00000137662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181504Re-query CCDS DB by Protein ID:ENSMUSP00000137662
Original member NCBI NM_010426.2 NP_034556.2 Updated not alive Link to Nucleotide Sequence:NM_010426.2Link to Protein Sequence:NP_034556.2Re-query CCDS DB by Nucleotide ID:NM_010426Re-query CCDS DB by Protein ID:NP_034556
Current member NCBI NM_010426.3 NP_034556.2 Accepted alive Link to Nucleotide Sequence:NM_010426.3Link to Protein Sequence:NP_034556.2Re-query CCDS DB by Nucleotide ID:NM_010426Re-query CCDS DB by Protein ID:NP_034556Link to BLAST:NP_034556.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034556.2 378 Q61080 378 100% 0 0

Chromosomal Locations for CCDS 22722.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121084399 121085374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121086719 121086879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGTCCGCGCCCGACAAGCAGCAGCCGCCGCACGGCGGGGGCACAGGAGGAGGCGGCGGCGCGGGCGGCC
AGGCCATGGACCCCGCGGCGGCGGGCCCCACCAAGGCCAAGAAGACCAACGCCGGCGTGCGGCGGCCGGA
GAAGCCGCCCTACTCGTACATCGCGCTCATCGTCATGGCTATCCAGAGCTCGCCCAGCAAGCGCCTGACC
CTCAGCGAGATCTACCAGTTTCTTCAGGCGCGCTTCCCCTTCTTCCGCGGCGCCTACCAGGGCTGGAAGA
ACTCCGTGCGCCACAACCTGTCGCTCAACGAGTGCTTCATCAAACTGCCCAAGGGCCTCGGGCGACCCGG
CAAGGGCCACTACTGGACCATCGATCCGGCTAGCGAGTTTATGTTCGAGGAGGGCTCGTTCCGCCGGCGG
CCGCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCTGTGTACAGCATGGTGAACGGGCTGGGCTTCA
ACCACCTCCCCGACACCTACGGCTTCCAGGGCTCCGGAGGCCTCTCGTGCGCGCCCAACAGCCTGGCGCT
GGAGGGCGGCTTGGGCATGATGAATGGCCATTTGGCTGGCAACGTGGACGGCATGGCTTTGCCCAGCCAC
TCGGTGCCACACCTGCCCTCCAACGGCGGCCACTCGTACATGGGTGGCTGCGGTGGCTCTGCGGCCGGGG
AGTACCCGCACCACGACAGCTCGGTGCCCGCTTCACCGCTGCTGCCGGCCGGCGCCGGCGGAGTCATGGA
GCCGCACGCCGTTTACTCCAGCTCTGCAGCAGCCTGGCCGCCCGCGGCCTCCGCGGCTCTCAACAGCGGG
GCCTCCTACATCAAGCAACAGCCTCTGTCCCCTTGCAACCCAGCCGCCAACCCCCTGTCTGGCAGCATCT
CCACGCACTCCCTGGAGCAGCCATACCTTCACCAAAACAGTCACAACGGGCCGGCAGAACTGCAAGGCAT
CCCTCGGTATCACTCACAGTCGCCCAGCATGTGTGACAGAAAGGAGTTTGTCTTCTCTTTCAATGCCATG
GCCTCTTCTTCTATGCATACAACAGGCGGAGGATCTTACTATCACCAGCAGGTCACCTACCAAGACATCA
AGCCGTGTGTGATGTGA

Translation (378 aa):
MSAPDKQQPPHGGGTGGGGGAGGQAMDPAAAGPTKAKKTNAGVRRPEKPPYSYIALIVMAIQSSPSKRLT
LSEIYQFLQARFPFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRR
PRGFRRKCQALKPVYSMVNGLGFNHLPDTYGFQGSGGLSCAPNSLALEGGLGMMNGHLAGNVDGMALPSH
SVPHLPSNGGHSYMGGCGGSAAGEYPHHDSSVPASPLLPAGAGGVMEPHAVYSSSAAAWPPAASAALNSG
ASYIKQQPLSPCNPAANPLSGSISTHSLEQPYLHQNSHNGPAELQGIPRYHSQSPSMCDRKEFVFSFNAM
ASSSMHTTGGGSYYHQQVTYQDIKPCVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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