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Report for CCDS22796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22796.1 Public Mus musculus 9 Msantd4 23 108 98 CCDS HistoryNCBI Gene:78100Re-query CCDS DB by CCDS ID:22796.1Re-query CCDS DB by GeneID:78100See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047173.9 ENSMUSP00000038267.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047173.9Link to Ensembl Protein Viewer:ENSMUSP00000038267.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000047173Re-query CCDS DB by Protein ID:ENSMUSP00000038267
Original member Current member EBI ENSMUST00000212075.1 ENSMUSP00000148805.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212075.1Link to Ensembl Protein Viewer:ENSMUSP00000148805.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212075Re-query CCDS DB by Protein ID:ENSMUSP00000148805
Original member Current member NCBI NM_145609.2 NP_663584.1 Accepted alive Link to Nucleotide Sequence:NM_145609.2Link to Protein Sequence:NP_663584.1Re-query CCDS DB by Nucleotide ID:NM_145609Re-query CCDS DB by Protein ID:NP_663584Link to BLAST:NP_663584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663584.1 345 Q91YU3 345 100% 0 0

Chromosomal Locations for CCDS 22796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4383681 4384142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4384739 4385314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAAGCAATTGAAAAGAAAAAGGAAAAGCAATTTTAGTGTTCAGGAGACTCAGACCCTTTTAAAAGAAA
TTACCAAGAGGAAGGAAGTCATTTTTTCCAAGCAGCTCAACACAACAATAAACGTGATGAAGCGAATGGC
CTGGGAGGAGATCGCACAGTGTGTGAATGCTGTCGGAGAAGGAGAGCAGAGGACAGGCACAGAGGTTAAG
AGACGTTACCTGGACTGGCGCGCACTCATGAAAAGGAAGAGGATGAAGGCCAACATGAAGCTCGTTGGTT
CTGGGTTTCCTCTGCCCACGTCTGATCTAGATGACTCTCTCACTGAAGACATAGATGAAAAAATTGCCTT
CCGAAATGATGCAAATTTTGAGTGGCAGAATGTGGCAGATTTCCGGGATGCAGGTGGATCCTTAACAGAG
GTCAAAGTGGAAGAGGAAGAAAGGGATCCTCAGAGCCCAGAATTTGAGATTGAGGAGGAGGAAGAGATGC
TGTCATCTGTCATACCAGATTCCAGGAGGGAAAACGAGCTCCCTGACTTCCCTCACATTGATGAGTTTTT
CACCCTCAATTCCACACCATCCAGACCCACCTATGATGAGCCCCATCTGCTCATGAACATAGAGAAACAG
AAGCTGGAGCTGGAAAAACGCCGACTTGATATTGAGGCGGAAAGGCTGCAGGTGGAAAAGGAGCGGCTGC
AGATAGAGAAAGAGCGCCTGCGCCACCTGGACCTGGAGCACGAGCGCTTACAGCTGGAGAAGGAGAGGCT
GCAGATCGAGAGAGAAAAGTGGAGGCTGCAGCTGGTCAGCACCGAGAAACCGGCTCTAGAGAACGAGCTG
GGCCAGGGCGAGAAGTCCATGCTGCAGCCACAGGACATCGAAGCAGAGAAGCTGAAACTTGAGCGCGAAC
GTCTACAGCTGGAAAAAGATCGGCTGCAATTTTTGAAGTTTGAATCAGAGAAGCTGCAGATAGAAAAGGA
GCGCTTGCAGGTGGAGAAGGAGAGACTGCGGATTCAGAAAGAAGGGCATTTGCCTTGA

Translation (345 aa):
MKQLKRKRKSNFSVQETQTLLKEITKRKEVIFSKQLNTTINVMKRMAWEEIAQCVNAVGEGEQRTGTEVK
RRYLDWRALMKRKRMKANMKLVGSGFPLPTSDLDDSLTEDIDEKIAFRNDANFEWQNVADFRDAGGSLTE
VKVEEEERDPQSPEFEIEEEEEMLSSVIPDSRRENELPDFPHIDEFFTLNSTPSRPTYDEPHLLMNIEKQ
KLELEKRRLDIEAERLQVEKERLQIEKERLRHLDLEHERLQLEKERLQIEREKWRLQLVSTEKPALENEL
GQGEKSMLQPQDIEAEKLKLERERLQLEKDRLQFLKFESEKLQIEKERLQVEKERLRIQKEGHLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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