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Report for CCDS22827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22827.1 Public Mus musculus 9 Mre11a 23 108 98 CCDS HistoryNCBI Gene:17535Re-query CCDS DB by CCDS ID:22827.1Re-query CCDS DB by GeneID:17535See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034405.10 ENSMUSP00000034405.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034405.10Link to Ensembl Protein Viewer:ENSMUSP00000034405.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034405Re-query CCDS DB by Protein ID:ENSMUSP00000034405
Original member NCBI NM_018736.3 NP_061206.1 Updated not alive Link to Nucleotide Sequence:NM_018736.3Link to Protein Sequence:NP_061206.1Re-query CCDS DB by Nucleotide ID:NM_018736Re-query CCDS DB by Protein ID:NP_061206
Current member NCBI NM_018736.4 NP_061206.1 Accepted alive Link to Nucleotide Sequence:NM_018736.4Link to Protein Sequence:NP_061206.1Re-query CCDS DB by Nucleotide ID:NM_018736Re-query CCDS DB by Protein ID:NP_061206Link to BLAST:NP_061206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061206.1 706 Q61216-1 706 100% 0 0

Chromosomal Locations for CCDS 22827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14785509 14785528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14786878 14787010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14790573 14790733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14795771 14795858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14797043 14797184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14799556 14799670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14802764 14802949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14805356 14805527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14809804 14809884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14811830 14811956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14815168 14815271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14816796 14816969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14819416 14819478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14825141 14825357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14826535 14826615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14829357 14829415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14830897 14830961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14832641 14832716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14833607 14833663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGAGCCCCACAGATCCACTTGACGATGAAGACACATTTAAAATCCTGGTTGCCACTGATATTCATCTTG
GATTTATGGAGAAAGATGCAGTTAGAGGAAATGATACATTTGTGACATTTGATGAAATCTTAAGACTTGC
CCTGGAAAATGAAGTGGATTTTATTTTGTTAGGTGGTGATCTTTTCCATGAAAACAAGCCCTCGAGGAAA
ACCCTGCACAGCTGCTTGGAGCTGCTTAGGAAGTACTGTATGGGTGACCGCCCTGTGCAGTTTGAGGTCA
TCAGTGATCAGTCAGTCAACTTTGGTTTTAGTAAGTTTCCATGGGTGAACTACCAGGATGGCAATCTCAA
CATTTCCATTCCAGTATTTAGTATCCACGGCAACCATGATGATCCCACGGGGGCAGATGCCCTCTGTGCC
CTGGATGTTTTAAGCTGTGCTGGGTTTGTGAATCACTTTGGACGGTCAATGTCGGTGGAGAAGGTTGACA
TTAGTCCGGTTCTGCTGCAGAAAGGAAGCACAAAACTCGCTCTGTACGGCTTAGGCTCCATTCCAGATGA
AAGGCTCTATCGGATGTTTGTGAATAAAAAAGTAACAATGTTGAGACCAAAGGAAGATGAGAACTCATGG
TTTAACTTATTTGTGATTCATCAGAACAGGAGTAAGCATGGAAACACCAACTTCATTCCAGAGCAGTTTT
TGGATGACTTCATCGACCTCGTTATCTGGGGCCATGAACATGAGTGTAAAATTGGCCCAATCAAAAATGA
GCAGCAGCTCTTCTATGTGTCTCAGCCCGGAAGCTCAGTGGTGACGTCCCTTTCCCCTGGAGAAGCTGTG
AAGAAACATGTAGGCTTGCTGCGCATTAAAGGGAGAAAGATGAACATGCAGAAGCTGCCTCTCCGCACCG
TGCGGCGGTTCTTCATAGAAGACGTGGTTCTGGCTAACCACCCAAACCTGTTCAACCCTGACAATCCTAA
GGTGACCCAGGCCATCCAGAGCTTCTGTCTGGAGAAGATTGAAGAAATGCTTGACAGTGCTGAGCGGGAA
CGACTGGGGAATCCTCAGCAGCCGGGGAAGCCTCTTATCCGACTACGGGTGGACTATAGTGGAGGCTTTG
AACCTTTCAACGTTCTTCGTTTTAGCCAGAAGTTTGTGGATCGAGTCGCTAACCCAAAAGATGTCATCCA
CTTTTTCAGGCACAGGGAACAAAAGGGAAAAACAGGAGAAGAGATCAACTTTGGGATGCTCATCACAAAA
CCTGCTTCAGAAGGAGCAACGCTTAGAGTAGAAGACCTCGTAAAGCAGTATTTCCAAACTGCAGAGAAGA
ATGTTCAGCTCTCGCTGCTGACAGAAAGAGGGATGGGCGAAGCAGTTCAAGAGTTTGTGGACAAGGAAGA
GAAAGATGCCATCGAGGAATTAGTGAAGTACCAGCTGGAGAAAACACAGCGGTTTCTTAAGGAGCGCCAT
ATTGATGCTCTGGAAGACAAGATTGATGAGGAGGTCCGACGTTTCCGAGAAAGCAGACAGAGAAATACCA
ACGAAGAAGATGATGAAGTTCGAGAGGCCATGAGCAGAGCCCGGGCCCTCAGATCACAGTCAGAGACCTC
CACCTCAGCCTTTAGTGCTGAGGACCTGAGCTTTGATACATCGGAGCAGACAGCAAATGACTCTGATGAC
AGCCTGTCAGCAGTGCCGAGCAGAGGCCGAGGCCGAGGCCGAGGGCGAAGAGGAGCCAGAGGGCAGAGCT
CGGCACCTAGAGGAGGCTCTCAGAGAGGCCGAGACACTGGGCTGGAGATCACTACTCGAGGCAGGAGCTC
AAAGGCCACCTCATCAACATCTAGAAACATGTCCATTATAGACGCTTTCAGATCTACCCGACAACAGCCT
TCTAGAAATGTAGCCCCTAAGAATTACTCAGAGACCATTGAGGTGGATGACTCTGACGAAGATGACATTT
TTCCTACCAATTCCAGGGCTGATCAAAGGTGGTCGGGCACAACATCTAGCAAACGGATGTCCCAGAGCCA
GACAGCCAAAGGGGTAGACTTTGAATCAGATGAGGATGATGACGATGACCCTTTCATGAGCAGTAGTTGC
CCAAGAAGAAACCGAAGATAA

Translation (706 aa):
MSPTDPLDDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKPSRK
TLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCA
LDVLSCAGFVNHFGRSMSVEKVDISPVLLQKGSTKLALYGLGSIPDERLYRMFVNKKVTMLRPKEDENSW
FNLFVIHQNRSKHGNTNFIPEQFLDDFIDLVIWGHEHECKIGPIKNEQQLFYVSQPGSSVVTSLSPGEAV
KKHVGLLRIKGRKMNMQKLPLRTVRRFFIEDVVLANHPNLFNPDNPKVTQAIQSFCLEKIEEMLDSAERE
RLGNPQQPGKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEINFGMLITK
PASEGATLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLKERH
IDALEDKIDEEVRRFRESRQRNTNEEDDEVREAMSRARALRSQSETSTSAFSAEDLSFDTSEQTANDSDD
SLSAVPSRGRGRGRGRRGARGQSSAPRGGSQRGRDTGLEITTRGRSSKATSSTSRNMSIIDAFRSTRQQP
SRNVAPKNYSETIEVDDSDEDDIFPTNSRADQRWSGTTSSKRMSQSQTAKGVDFESDEDDDDDPFMSSSC
PRRNRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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