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Report for CCDS22835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22835.1 Public Mus musculus 9 4931406C07Rik 23 108 98 CCDS HistoryNCBI Gene:70984Re-query CCDS DB by CCDS ID:22835.1Re-query CCDS DB by GeneID:70984See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034414.9 ENSMUSP00000034414.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034414.9Link to Ensembl Protein Viewer:ENSMUSP00000034414.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034414Re-query CCDS DB by Protein ID:ENSMUSP00000034414
Original member Current member EBI ENSMUST00000178977.8 ENSMUSP00000136335.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178977.8Link to Ensembl Protein Viewer:ENSMUSP00000136335.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178977Re-query CCDS DB by Protein ID:ENSMUSP00000136335
Original member Current member EBI ENSMUST00000180339.7 ENSMUSP00000136717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180339.7Link to Ensembl Protein Viewer:ENSMUSP00000136717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180339Re-query CCDS DB by Protein ID:ENSMUSP00000136717
Original member Current member NCBI NM_001199484.1 NP_001186413.1 Accepted alive Link to Nucleotide Sequence:NM_001199484.1Link to Protein Sequence:NP_001186413.1Re-query CCDS DB by Nucleotide ID:NM_001199484Re-query CCDS DB by Protein ID:NP_001186413Link to BLAST:NP_001186413.1
Original member Current member NCBI NM_001199485.1 NP_001186414.1 Accepted alive Link to Nucleotide Sequence:NM_001199485.1Link to Protein Sequence:NP_001186414.1Re-query CCDS DB by Nucleotide ID:NM_001199485Re-query CCDS DB by Protein ID:NP_001186414Link to BLAST:NP_001186414.1
Original member Current member NCBI NM_133732.3 NP_598493.1 Accepted alive Link to Nucleotide Sequence:NM_133732.3Link to Protein Sequence:NP_598493.1Re-query CCDS DB by Nucleotide ID:NM_133732Re-query CCDS DB by Protein ID:NP_598493Link to BLAST:NP_598493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186413.1 315 Q91V76 315 100% 0 0
NP_001186414.1 315 Q91V76 315 100% 0 0
NP_598493.1 315 Q91V76 315 100% 0 0

Chromosomal Locations for CCDS 22835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15284818 15284991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15287356 15287472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15290667 15290816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15292000 15292176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15294432 15294533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15294686 15294759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15297843 15297941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15301367 15301421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCTTGCAGTGAGTTTTCCTTTCACATGCCAAGTCTGGAGGAGCTTGCTGAAGTTTTGCAGAAGGGGC
TAACTGACAACTTTGCTGATGTCCAGGTCTCAGTGGTTGACTGCCCAGATTTAACAAAGGAGCCATTTAC
CTTTCCTGTAAGAGGCATCTGTGGGCAAACTAGAATTGCAGAAGTAGGAGGTGTGCCTTACTTATTGCCT
CTTGTAAACAAAAAAAAAGTTTATGACCTAAATGAAATTGCAAAAGTAATAAAGCTGCCCGGAGCTTTTA
TCCTTGGAGCAGGGGCAGGTCCATTTCAGACGCTTGGGTTCAATTCTGAGTTCATGCCAATTGTTCAAAC
AGCAAGTGAACACAACCAACCTGTGAATGGAAGTTACTTTGCCCATAAAAACCCTGCAGATGGAGCGTGC
CTGCTGGAGAAATACAGCCAAAAATATCATGATTTTGGATGTGCACTACTGGCTAATCTTTTTGCCAGTG
AGGGCCAACCTGGCAAGGTCATTGAAGTGCAAGCCAAGAGAAGAACAGGAGAACTTAACTTTGTGAGCTG
CATGAGACAGACACTGGAGGAGCACTATGGTGACAAGCCTGTGGGGATGGGAGGCACCTTCATTGTGCAG
AAGGGGAAAGTGAAAGCCCACATCATGCCTGCAGAGTTTTCTTCCTGCCCACTGAACTCGGACGAAGCTG
TCAATAAATGGCTACACTTCTATGAGATGAAGGCTCCCTTGGTTTGTCTACCAGTTTTTGTTTCCAAAGA
CCCTGGACTTGATTTGCGACTGGAGCACACACATTTCTTCAGTCATCATGGAGAAGGTGGACACTACCAC
TACGATACGACCCCAGACACAGTGGAGTACCTTGGATACTTCTCACCTGCACAGTTCCTCTATCGCATTG
ATCAGCCCAAAGAGACCCATGCCTTTGGGAGAGATTAA

Translation (315 aa):
MACSEFSFHMPSLEELAEVLQKGLTDNFADVQVSVVDCPDLTKEPFTFPVRGICGQTRIAEVGGVPYLLP
LVNKKKVYDLNEIAKVIKLPGAFILGAGAGPFQTLGFNSEFMPIVQTASEHNQPVNGSYFAHKNPADGAC
LLEKYSQKYHDFGCALLANLFASEGQPGKVIEVQAKRRTGELNFVSCMRQTLEEHYGDKPVGMGGTFIVQ
KGKVKAHIMPAEFSSCPLNSDEAVNKWLHFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEGGHYH
YDTTPDTVEYLGYFSPAQFLYRIDQPKETHAFGRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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