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Report for CCDS22865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22865.1 Public Mus musculus 9 Or7e169 23 108 98 CCDS HistoryNCBI Gene:258521Re-query CCDS DB by CCDS ID:22865.1Re-query CCDS DB by GeneID:258521See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086482.3 ENSMUSP00000130735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086482.3Link to Ensembl Protein Viewer:ENSMUSP00000130735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086482Re-query CCDS DB by Protein ID:ENSMUSP00000130735
Original member Current member EBI ENSMUST00000212353.1 ENSMUSP00000148568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212353.1Link to Ensembl Protein Viewer:ENSMUSP00000148568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212353Re-query CCDS DB by Protein ID:ENSMUSP00000148568
Original member Current member NCBI NM_146528.2 NP_666739.1 Accepted alive Link to Nucleotide Sequence:NM_146528.2Link to Protein Sequence:NP_666739.1Re-query CCDS DB by Nucleotide ID:NM_146528Re-query CCDS DB by Protein ID:NP_666739Link to BLAST:NP_666739.1

Chromosomal Locations for CCDS 22865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19845664 19846617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGAACTATATAATTTAACAAGTAACTTGGAATTCCTTCTCCTTGGACTCTCAGAGGACCCTGAACTAC
AACCTGTCTTATTTGCACTATTCCTGCTCATATACCTGCTCACTGTGCTTGGAAATGTGCTCATCATCTT
GGCCATCAGCTGTGATTCCCACCTCCACAGCCCAATGTACTTCTTCCTCTACAACCTTTCATTGTCTGAC
ATGGGCTTCAGCAGCACCACCATCCCCAAAATGCTGATAAACTTGCATGCCCATAACAGAACCATAACTT
ATGCTGAATGCCTAACCCAGGTATCTTTCTTTTTTCTTTTTGGGTGTATGGACAGCGTTCTACTGGCAGT
GATGGCCTACGACCGATGGGTGGCCATTTGTCACCCTCTACACTACCAAGTCATTCTAAATCCTCGTCTG
TGTAGATATTTGGTTGTAATGTCATTTTGTATCAGTCTCATTGATTCACAGGTGCACTGCTTTATGGTGT
CACAATTAAAATTTTGTACTAATATAAAAATCCCTCATTTCTTCTGTGATGTTCCAGAGCTTCTAAAACT
TGCCTGTTCTGACACCTCTATAAATAGCATAGTTATATTTCTTGTCAGTATCATTGTTGGATTCCTCCCT
GCCTCAGGAATCTTTTACTCCTACTATAAGATTATTTCCTCCATTGTTAGAGTTCCTTCATCTGGGGGGA
AATGTAAAGCGTTCTCTACTTGTGGATCTCATCTGTCAGTTGTTTGCTTATTTTATGGAACAGGTCTTGG
TGTATACCTTAGCTCATCTATTTCTAGTTCTTCCAAGGAAAGTGTGGTGACTTCAGTAATGTATACCATG
GTGGTTCCCATGATAAACCCCTTCATCTACAGCTTGAGGAACAAGGATATCAAAAAGGCCCTACAGAAAA
TTTTCAGTCAAATAATAATGTTACCTACCTATATAATCCCTTAA

Translation (317 aa):
MELYNLTSNLEFLLLGLSEDPELQPVLFALFLLIYLLTVLGNVLIILAISCDSHLHSPMYFFLYNLSLSD
MGFSSTTIPKMLINLHAHNRTITYAECLTQVSFFFLFGCMDSVLLAVMAYDRWVAICHPLHYQVILNPRL
CRYLVVMSFCISLIDSQVHCFMVSQLKFCTNIKIPHFFCDVPELLKLACSDTSINSIVIFLVSIIVGFLP
ASGIFYSYYKIISSIVRVPSSGGKCKAFSTCGSHLSVVCLFYGTGLGVYLSSSISSSSKESVVTSVMYTM
VVPMINPFIYSLRNKDIKKALQKIFSQIIMLPTYIIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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