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Report for CCDS22875.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22875.2 Public Mus musculus 9 Or7d9 23 108 98 CCDS HistoryNCBI Gene:258822Re-query CCDS DB by CCDS ID:22875.2Re-query CCDS DB by GeneID:258822See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22875.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 22875.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071725.3 ENSMUSP00000071641.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071725.3Link to Ensembl Protein Viewer:ENSMUSP00000071641.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071725Re-query CCDS DB by Protein ID:ENSMUSP00000071641
Original member Current member NCBI NM_146825.2 NP_667036.2 Accepted alive Link to Nucleotide Sequence:NM_146825.2Link to Protein Sequence:NP_667036.2Re-query CCDS DB by Nucleotide ID:NM_146825Re-query CCDS DB by Protein ID:NP_667036Link to BLAST:NP_667036.2

Chromosomal Locations for CCDS 22875.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20282477 20282484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20285685 20286636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGCAAAGGAGAGAAGCCTCTGGAATGGGAAAAGAAAATCACACAGAACTATCACAATTCCTGCTACTGG
GTCTCTCAGATGATCCTAAATTGCAGCCTATTCTTTTCGGGATATTCTTATTTATGTACCTGGTCACAGT
GCTTGGTAACCTGCTCATCATCCTGGCTGTCAGTTCTGATTCCCATCTCCACAACCCCATGTACTTCTTC
CTCTCCAACCTCTCATTTGTAGACATGTGTTTCACTTCTACCACTGTCCCAAAGATGCTGGTGAACATCC
AGACAAAGAACAAAAATATCTCCTACATGCAGTGCCTCACTCAAGTCTATTTTTTTATGGTTTTTGCTGG
AATGGATAATTTCTTACTGACTGTAATGGCCTTTGACCGCTTTGTGGCTATTTGTCACCCCTTAAACTAC
ACAGTCATCATGAACCCTCACTTCTGTTGCTTCCTTGTGCTAATGTGCTGGATTATCATTTTATCAGTCT
CCCTGTTTCATAGTCTATTAATGAAGCAATTAACTTTTTCCATGGGTACTGAAATCCCACATTTCTTCTG
TGAGTTGGCTCAAATTCTCAGAGTAGCAAGCTCTGATATTCTCATCAATAATATCGCATTATATGTGGCT
ACTGCCCTGTTATGTGTGTTTCCTGTCACTGGAATTCTCTTCTCTTACTCGCAGATTGTCTCCTCCTTAT
TGAATATGTCTTCAGTAGTCAGCAAGTATAGAGCCTTTTCCACCTGTGGATCTCACCTCTGTGTGGTCTG
TTTGTTTTATGGTACAGCACTGGGGGTTTACCTCAGTTCAGCTGGGACTGATGTTTCTCAAGGAAGCACT
ATAGCCTCAGTGATGTATACTGTGGTCACTCCTATGCTCAACCCATTCATCTACAGCCTGAGGAATAAAG
ATGTGAAGGGGGCTCTGGTAAGAATCCTTAAAGTATATTCTTGTCCCTGA

Translation (319 aa):
MQRREASGMGKENHTELSQFLLLGLSDDPKLQPILFGIFLFMYLVTVLGNLLIILAVSSDSHLHNPMYFF
LSNLSFVDMCFTSTTVPKMLVNIQTKNKNISYMQCLTQVYFFMVFAGMDNFLLTVMAFDRFVAICHPLNY
TVIMNPHFCCFLVLMCWIIILSVSLFHSLLMKQLTFSMGTEIPHFFCELAQILRVASSDILINNIALYVA
TALLCVFPVTGILFSYSQIVSSLLNMSSVVSKYRAFSTCGSHLCVVCLFYGTALGVYLSSAGTDVSQGST
IASVMYTVVTPMLNPFIYSLRNKDVKGALVRILKVYSCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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