NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22921.1 Public Mus musculus 9 Cnn1 23 108 98 CCDS HistoryNCBI Gene:12797Re-query CCDS DB by CCDS ID:22921.1Re-query CCDS DB by GeneID:12797See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001384.5 ENSMUSP00000001384.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001384.5Link to Ensembl Protein Viewer:ENSMUSP00000001384.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001384Re-query CCDS DB by Protein ID:ENSMUSP00000001384
Original member Current member NCBI NM_009922.4 NP_034052.3 Accepted alive Link to Nucleotide Sequence:NM_009922.4Link to Protein Sequence:NP_034052.3Re-query CCDS DB by Nucleotide ID:NM_009922Re-query CCDS DB by Protein ID:NP_034052Link to BLAST:NP_034052.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034052.3 297 Q08091-1 297 100% 0 0

Chromosomal Locations for CCDS 22921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22099356 22099418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22101141 22101262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22104306 22104372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22105370 22105507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22105670 22105780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22107751 22107897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22107986 22108231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTCTTCTGCACATTTTAACCGAGGTCCTGCCTACGGCTTGTCTGCTGAAGTAAAGAACAAGCTGGCCC
AGAAATACGACCATCAGCGGGAGCAGGAGCTGAGAGAGTGGATTGAGGGGGTGACAGGCCGGCGCATCGG
GAACAACTTCATGGATGGCCTCAAAGACGGGATCATTCTTTGCGAATTTATCAACAAGCTGCAGCCGGGT
TCTGTGAAGAAGGTCAATGAGTCAACTCAGAACTGGCACCAGCTGGAGAACATAGGTAATTTCATCAAAG
CCATTACCAAGTATGGGGTGAAACCCCACGACATCTTTGAGGCCAACGACCTGTTTGAAAACACCAACCA
TACACAAGTTCAGTCCACTCTCCTGGCTCTGGCCAGCATGGCCAAGACAAAAGGAAACAAAGTCAATGTG
GGAGTCAAGTATGCAGAGAAACAAGAGCGGAGATTTGAGCCGGAGAAGTTGAGAGAAGGCAGGAACATCA
TTGGACTGCAGATGGGCACCAACAAGTTTGCCAGTCAGCAGGGCATGACGGCCTACGGTACACGGCGTCA
CCTCTATGATCCCAAACTGGGTACAGATCAGCCTCTGGACCAGGCGACCATCAGCCTGCAGATGGGCACC
AACAAGGGTGCCAGCCAGGCTGGCATGACTGCACCAGGCACCAAGCGGCAGATCTTTGAGCCAGGTCTGG
GCATGGAACACTGCGACACACTCAACGTCAGCTTGCAGATGGGCAGCAACAAGGGGGCCTCCCAGAGGGG
CATGACAGTGTATGGGCTTCCTCGCCAGGTGTACGATCCCAAGTACTGCCTGAACCCGGAGTACCCAGAG
CTGAGTGAGCCCACCCACAATCACCACCCGCACAACTACTACAACTCTGCCTAG

Translation (297 aa):
MSSAHFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPG
SVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNV
GVKYAEKQERRFEPEKLREGRNIIGLQMGTNKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGT
NKGASQAGMTAPGTKRQIFEPGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLNPEYPE
LSEPTHNHHPHNYYNSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH