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Report for CCDS2293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2293.1 Public Homo sapiens 2 CALCRL 24 110 108 CCDS HistoryNCBI Gene:10203Re-query CCDS DB by CCDS ID:2293.1Re-query CCDS DB by GeneID:10203See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392370.8 ENSP00000376177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392370.8Link to Ensembl Protein Viewer:ENSP00000376177.3Re-query CCDS DB by Nucleotide ID:ENST00000392370Re-query CCDS DB by Protein ID:ENSP00000376177
Original member Current member EBI ENST00000409998.5 ENSP00000386972.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409998.5Link to Ensembl Protein Viewer:ENSP00000386972.1Re-query CCDS DB by Nucleotide ID:ENST00000409998Re-query CCDS DB by Protein ID:ENSP00000386972
Original member Current member EBI ENST00000410068.5 ENSP00000387190.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410068.5Link to Ensembl Protein Viewer:ENSP00000387190.1Re-query CCDS DB by Nucleotide ID:ENST00000410068Re-query CCDS DB by Protein ID:ENSP00000387190
Original member Current member NCBI NM_001271751.2 NP_001258680.1 Accepted alive Link to Nucleotide Sequence:NM_001271751.2Link to Protein Sequence:NP_001258680.1Re-query CCDS DB by Nucleotide ID:NM_001271751Re-query CCDS DB by Protein ID:NP_001258680Link to BLAST:NP_001258680.1
Original member Current member NCBI NM_001369434.1 NP_001356363.1 Accepted alive Link to Nucleotide Sequence:NM_001369434.1Link to Protein Sequence:NP_001356363.1Re-query CCDS DB by Nucleotide ID:NM_001369434Re-query CCDS DB by Protein ID:NP_001356363Link to BLAST:NP_001356363.1
Original member Current member NCBI NM_001369435.1 NP_001356364.1 Accepted alive Link to Nucleotide Sequence:NM_001369435.1Link to Protein Sequence:NP_001356364.1Re-query CCDS DB by Nucleotide ID:NM_001369435Re-query CCDS DB by Protein ID:NP_001356364Link to BLAST:NP_001356364.1
Original member Current member NCBI NM_005795.6 NP_005786.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005795.6Link to Protein Sequence:NP_005786.1Re-query CCDS DB by Nucleotide ID:NM_005795Re-query CCDS DB by Protein ID:NP_005786Link to BLAST:NP_005786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258680.1 461 Q16602 461 100% 0 0
NP_001356363.1 461 Q16602 461 100% 0 0
NP_001356364.1 461 Q16602 461 100% 0 0
NP_005786.1 461 Q16602 461 100% 0 0

Chromosomal Locations for CCDS 2293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 187346184 187346399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187351920 187351961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187352114 187352332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187359063 187359129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187359212 187359272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187360598 187360751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187363376 187363502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187378940 187379031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187380467 187380579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187380677 187380787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187383173 187383305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 187385545 187385595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGAGAAAAAGTGTACCCTGTATTTTCTGGTTCTCTTGCCTTTTTTTATGATTCTTGTTACAGCAGAAT
TAGAAGAGAGTCCTGAGGACTCAATTCAGTTGGGAGTTACTAGAAATAAAATCATGACAGCTCAATATGA
ATGTTACCAAAAGATTATGCAAGACCCCATTCAACAAGCAGAAGGCGTTTACTGCAACAGAACCTGGGAT
GGATGGCTCTGCTGGAACGATGTTGCAGCAGGAACTGAATCAATGCAGCTCTGCCCTGATTACTTTCAGG
ACTTTGATCCATCAGAAAAAGTTACAAAGATCTGTGACCAAGATGGAAACTGGTTTAGACATCCAGCAAG
CAACAGAACATGGACAAATTATACCCAGTGTAATGTTAACACCCACGAGAAAGTGAAGACTGCACTAAAT
TTGTTTTACCTGACCATAATTGGACACGGATTGTCTATTGCATCACTGCTTATCTCGCTTGGCATATTCT
TTTATTTCAAGAGCCTAAGTTGCCAAAGGATTACCTTACACAAAAATCTGTTCTTCTCATTTGTTTGTAA
CTCTGTTGTAACAATCATTCACCTCACTGCAGTGGCCAACAACCAGGCCTTAGTAGCCACAAATCCTGTT
AGTTGCAAAGTGTCCCAGTTCATTCATCTTTACCTGATGGGCTGTAATTACTTTTGGATGCTCTGTGAAG
GCATTTACCTACACACACTCATTGTGGTGGCCGTGTTTGCAGAGAAGCAACATTTAATGTGGTATTATTT
TCTTGGCTGGGGATTTCCACTGATTCCTGCTTGTATACATGCCATTGCTAGAAGCTTATATTACAATGAC
AATTGCTGGATCAGTTCTGATACCCATCTCCTCTACATTATCCATGGCCCAATTTGTGCTGCTTTACTGG
TGAATCTTTTTTTCTTGTTAAATATTGTACGCGTTCTCATCACCAAGTTAAAAGTTACACACCAAGCGGA
ATCCAATCTGTACATGAAAGCTGTGAGAGCTACTCTTATCTTGGTGCCATTGCTTGGCATTGAATTTGTG
CTGATTCCATGGCGACCTGAAGGAAAGATTGCAGAGGAGGTATATGACTACATCATGCACATCCTTATGC
ACTTCCAGGGTCTTTTGGTCTCTACCATTTTCTGCTTCTTTAATGGAGAGGTTCAAGCAATTCTGAGAAG
AAACTGGAATCAATACAAAATCCAATTTGGAAACAGCTTTTCCAACTCAGAAGCTCTTCGTAGTGCGTCT
TACACAGTGTCAACAATCAGTGATGGTCCAGGTTATAGTCATGACTGTCCTAGTGAACACTTAAATGGAA
AAAGCATCCATGATATTGAAAATGTTCTCTTAAAACCAGAAAATTTATATAATTGA

Translation (461 aa):
MEKKCTLYFLVLLPFFMILVTAELEESPEDSIQLGVTRNKIMTAQYECYQKIMQDPIQQAEGVYCNRTWD
GWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWTNYTQCNVNTHEKVKTALN
LFYLTIIGHGLSIASLLISLGIFFYFKSLSCQRITLHKNLFFSFVCNSVVTIIHLTAVANNQALVATNPV
SCKVSQFIHLYLMGCNYFWMLCEGIYLHTLIVVAVFAEKQHLMWYYFLGWGFPLIPACIHAIARSLYYND
NCWISSDTHLLYIIHGPICAALLVNLFFLLNIVRVLITKLKVTHQAESNLYMKAVRATLILVPLLGIEFV
LIPWRPEGKIAEEVYDYIMHILMHFQGLLVSTIFCFFNGEVQAILRRNWNQYKIQFGNSFSNSEALRSAS
YTVSTISDGPGYSHDCPSEHLNGKSIHDIENVLLKPENLYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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