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Report for CCDS23024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23024.1 Public Mus musculus 9 Vwa5a 23 108 98 CCDS HistoryNCBI Gene:67776Re-query CCDS DB by CCDS ID:23024.1Re-query CCDS DB by GeneID:67776See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001544.11 ENSMUSP00000001544.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001544.11Link to Ensembl Protein Viewer:ENSMUSP00000001544.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001544Re-query CCDS DB by Protein ID:ENSMUSP00000001544
Original member Current member EBI ENSMUST00000118144.7 ENSMUSP00000113596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118144.7Link to Ensembl Protein Viewer:ENSMUSP00000113596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118144Re-query CCDS DB by Protein ID:ENSMUSP00000113596
Original member Current member NCBI NM_001145957.1 NP_001139429.1 Accepted alive Link to Nucleotide Sequence:NM_001145957.1Link to Protein Sequence:NP_001139429.1Re-query CCDS DB by Nucleotide ID:NM_001145957Re-query CCDS DB by Protein ID:NP_001139429Link to BLAST:NP_001139429.1
Original member Current member NCBI NM_172767.3 NP_766355.3 Accepted alive Link to Nucleotide Sequence:NM_172767.3Link to Protein Sequence:NP_766355.3Re-query CCDS DB by Nucleotide ID:NM_172767Re-query CCDS DB by Protein ID:NP_766355Link to BLAST:NP_766355.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139429.1 793 Q99KC8 793 100% 0 0
NP_766355.3 793 Q99KC8 793 100% 0 0

Chromosomal Locations for CCDS 23024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38722388 38722430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38722546 38722748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38723027 38723249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38723367 38723542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38723846 38723960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38726943 38727112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38727754 38727842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38727994 38728138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38728622 38728701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38733865 38733979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38734697 38734861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38735559 38735659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38735952 38736205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38737743 38737808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38737903 38738001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38738486 38738616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38741098 38741224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38741694 38741773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGAGCATCACTGTGGTCTAATCACTAGCAACAAAGAGACAGTACCACTGAAAAATATCTCAGTAACAT
TGTCCATCAATGAATTTGTGGCTGCTGTGGTGGCAACCTTAAATTACGAGAATGAGGAGAAAGTCCCATT
AGAGGCGACCTTTGTGTTTCCTATGGATGAAGACTCTGCTGTCTACAGCTTTGAAGCCTTGGTGGATGGG
AAGAAAATTGTGGCAGAGTTGCAGGATAAGATGAAGGCTCACAGCGAGTATGAGGAAGCCCTCTCCCAGG
GCCACCAAGCATACTTATTGGAAGAGGATGACTATTCCAGAGATGTCTTTTCTTGCAACGTGGGGAACCT
GCAGCCTGGAGCTAAGGTTGCAGTTACCCTGAGGTATGTGCAGGAACTGCCCTTGGAAACAGATGGGGCC
CTGCGCTACCTGCTCCCAGCAATCTTGAATCCAAGATATCAGCTCTCTGAACAGTCAGCAAACAGTTGCT
TGAACATCCAGAAACCCACAGTCCCTTTGGAAGACCTGCCTTACACACTCAACATGACTGCCACCATCAC
TTCCCAGCATGGTATTGAAAGGGTCCAGTCCAACTGCTCTTTGAGCCCTATTCAGTACCTTACAGATGAC
AAGACTTCTGCTCAGGTTTCCTTGACTGAAGGGCACAAGTTTGACCGGGATGTGGAACTCCTGATTTACT
ACAATGAAGTGCACAGCCCCAGTGTAGCTGTGGAAATGGGGATGCTGGACATGAAGCCAGACAGTTTGAT
GGGAGCTCCTTCTGCAATGGTGAGTTTCTACCCAGATATCCCAGAAGTGGAAGCCTCAAAGGCCTGTGGA
GAATTTGTGTTTCTCATGGACCGTTCAGGAAGTATGGACTCCCCCATGAGCACAGAGAACAATTCTCAGC
TACGCATCGAGGCTGCCAAGGAAACTCTGTTGCTGTTGCTGAAGAGTTTGCCTATGGGTTGTTATTTTAA
TATCTATGGATTTGGATCTTCCTATGAGAAATTCTTTCCGGAGAGTGTGAAGTACACTCAGGATACAATG
GAGGACGCAGTGAAAAGAGTGAAGGCTTTAAAAGCCAACTTAGGGGGTACTGAAATCTTGACACCCCTCT
GCAACATTTACAAGGCATCCTCCATTCCTGGTCATCCCCTACAGCTCTTTGTCTTCACGGATGGAGAAGT
GAGTGACACATTTAGTGTCATTAGAGAAGTTAAGTTAAACAGCAAGAAACACAGATGTTTCTCTTTTGGA
ATTGGACAAGGAGCCTCGACCAGTTTAATCAAAAATATCGCCCGGGTATCAGGGGGTACTGCAGTGTTTA
TCACAGGCAAGGACAGGATGCAGACCAAGGCTCTTGGGTCTCTCAAGTTTGCTCTACAGTGTGCAGTGGA
TAACATCTCTCTAAGTTGGGATTTGCCTCCTGGTTTGTCTGTTAAAATGCTTTCTCCAGAGCAACTTACC
ATCTTTAGGGGTCAGAGGTTAATCATCTATGCACAACTGACTGGGCTTATGCCTCAAGTGGAGAGCACAG
GAGCAGTGTGCCTCAAGCACATCCTCCAGGGTAGGAGTCTGGAAAACAGGGTGACATTTTCCCTGCAACC
CAAGGCAAATGACAATTTCACCATTCATCGGTTGGCTGCAAAGTCCTTGATTCAGACTAAGGATTTTGGA
TCCCAGGAGGCCTCAAAAGAAGAAAAAGAAGATGTGATGAACATCAGCCTTCAGTCTGGAGTCCTTAGCT
CCTTCACAGCCTTCATTGCCATAAACAAGGAGCTGAACAAACCAGTGCAGGGGCCTCTGGCCCACAGAGT
GATTCCTAGGCCAGTGATGGCTGGATCTAGTAGTATGCGGTTCTACTCCAGTTTCTCTGGTGGCTTTAAA
GGCCCACAGCCAAGAAGTTTACGTGTACCAGCATATGATTTATGTTCAGCAGAAAGTGCTAATCTTGTCC
TCAAAAAATCTGCGTGTTCTGCTATACAGAAGAAAAAGACAAATTCTTCTACCAATAAAAGCAACTTGAA
AAAGGAACACAAAGCATTTGGAGAGAATGCTGTGGTGCAGCTGATTTCTCTCCAAAAGGCAAATGGCTCC
TGGGAGCTAGATGAAGATTTGACCAAGATCCTGGGCACTAAGTCAAAAGACATCAAGGCTGCAAACCCTG
CCAAGCATGAGGACCCCTCAGCCTGGTCCACAGTGCTGGCTGTGGTCTGGTTGCATGCCAACGGCACAGA
CTTAAAGTGTGAATGGGAGCTTCTGGAAAGGAAGGCTGTGGCCTGGCTTCATGACCATGCAGGTTCCTCC
ATCCCCATGCTTGTGCAAGCTGCCAATAGTCTCCTGAAATTATCTGTGAATCCTGCTGTCTTTGGCGTCT
AA

Translation (793 aa):
MEHHCGLITSNKETVPLKNISVTLSINEFVAAVVATLNYENEEKVPLEATFVFPMDEDSAVYSFEALVDG
KKIVAELQDKMKAHSEYEEALSQGHQAYLLEEDDYSRDVFSCNVGNLQPGAKVAVTLRYVQELPLETDGA
LRYLLPAILNPRYQLSEQSANSCLNIQKPTVPLEDLPYTLNMTATITSQHGIERVQSNCSLSPIQYLTDD
KTSAQVSLTEGHKFDRDVELLIYYNEVHSPSVAVEMGMLDMKPDSLMGAPSAMVSFYPDIPEVEASKACG
EFVFLMDRSGSMDSPMSTENNSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSSYEKFFPESVKYTQDTM
EDAVKRVKALKANLGGTEILTPLCNIYKASSIPGHPLQLFVFTDGEVSDTFSVIREVKLNSKKHRCFSFG
IGQGASTSLIKNIARVSGGTAVFITGKDRMQTKALGSLKFALQCAVDNISLSWDLPPGLSVKMLSPEQLT
IFRGQRLIIYAQLTGLMPQVESTGAVCLKHILQGRSLENRVTFSLQPKANDNFTIHRLAAKSLIQTKDFG
SQEASKEEKEDVMNISLQSGVLSSFTAFIAINKELNKPVQGPLAHRVIPRPVMAGSSSMRFYSSFSGGFK
GPQPRSLRVPAYDLCSAESANLVLKKSACSAIQKKKTNSSTNKSNLKKEHKAFGENAVVQLISLQKANGS
WELDEDLTKILGTKSKDIKAANPAKHEDPSAWSTVLAVVWLHANGTDLKCEWELLERKAVAWLHDHAGSS
IPMLVQAANSLLKLSVNPAVFGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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