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Report for CCDS23030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23030.1 Public Mus musculus 9 Or8d1 23 108 98 CCDS HistoryNCBI Gene:18324Re-query CCDS DB by CCDS ID:23030.1Re-query CCDS DB by GeneID:18324See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104874.2 ENSMUSP00000100467.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104874.2Link to Ensembl Protein Viewer:ENSMUSP00000100467.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000104874Re-query CCDS DB by Protein ID:ENSMUSP00000100467
Original member Current member NCBI NM_146783.2 NP_666994.2 Accepted alive Link to Nucleotide Sequence:NM_146783.2Link to Protein Sequence:NP_666994.2Re-query CCDS DB by Nucleotide ID:NM_146783Re-query CCDS DB by Protein ID:NP_666994Link to BLAST:NP_666994.2

Chromosomal Locations for CCDS 23030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38855064 38855990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGGCACTGGGAATCATTCTGCAGCAGTTGTGTTTGTCTTGGTGGAATTAACACAGCAGCCTGAACTCC
TGCTGCCCCTCTTCATTCTGTTCCTGGGCATCTATGTGGTAACAGCAGTGGGAAACCTGGGCATGATCCT
GCTGATCACAGTCAGTCCACTGCTGCATACTCCCATGTACTATTTCCTCAGCAGCTTATCCTGTGTTGAT
CTCTGCTATTCCACTGTCATTACACCCAAAATGCTGGTGAACTTTCTTGGGAAGAAAAATGTGATTGTCT
ACTCAGAGTGCATGGCCCAGCTCTTTTTCTTTGTGATCTTTGTGGTGGCTGAGGGCTACCTGCTGACTGC
CATGGCGTATGATCGCTATGTGGCCATCTGTAGACCATTGCTGTATAATGTGATCATGTCCTCCAGACTT
TGCTCACTGCTAGTGTTGGTTGCTTTCATCTTAGGCTTTGTTTCTGCCTTAGCACACACAAGTGCTATGA
TGAATCTGAGCTTCTGTAAATCCCATATCATAAGCCATTATTTCTGTGATGTTCTTCCCCTGCTCAATCT
CTCCTGTTCTAACACACATCTCAATGAGCTTCTCCTATTTATTATTGGAGGGTTCAACACCTTGGTGCCT
ACTCTAGCTGTTGCTATCTCCTATGTCTTCATCTTCTGCAGCATCCTTCACATCAAGTCATCAAAGGGCA
GGTCCAAATCCTTTGGAACCTGCAGCTCTCATCTTATGGCTGTGGGGATATTCTTTGGGTCTATCACCTT
CATGTATTTCAAGCCTTCTTCCAGTAACTCTCTGGAGCAAGAGAAGGTGTCTTCTGTGTTCTACACCACA
GTGATCCCCATGCTCAATCCATTAATATATAGTTTGAGGAACAAGGATGTGAAGAAAGCATTGGGGAGAT
TCTTTGTAGGGAGATAA

Translation (308 aa):
MGTGNHSAAVVFVLVELTQQPELLLPLFILFLGIYVVTAVGNLGMILLITVSPLLHTPMYYFLSSLSCVD
LCYSTVITPKMLVNFLGKKNVIVYSECMAQLFFFVIFVVAEGYLLTAMAYDRYVAICRPLLYNVIMSSRL
CSLLVLVAFILGFVSALAHTSAMMNLSFCKSHIISHYFCDVLPLLNLSCSNTHLNELLLFIIGGFNTLVP
TLAVAISYVFIFCSILHIKSSKGRSKSFGTCSSHLMAVGIFFGSITFMYFKPSSSNSLEQEKVSSVFYTT
VIPMLNPLIYSLRNKDVKKALGRFFVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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