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Report for CCDS23048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23048.1 Public Mus musculus 9 Or8g20 23 108 98 CCDS HistoryNCBI Gene:18343Re-query CCDS DB by CCDS ID:23048.1Re-query CCDS DB by GeneID:18343See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077757.6 ENSMUSP00000076935.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077757.6Link to Ensembl Protein Viewer:ENSMUSP00000076935.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077757Re-query CCDS DB by Protein ID:ENSMUSP00000076935
Original member Current member NCBI NM_146830.2 NP_667041.2 Accepted alive Link to Nucleotide Sequence:NM_146830.2Link to Protein Sequence:NP_667041.2Re-query CCDS DB by Nucleotide ID:NM_146830Re-query CCDS DB by Protein ID:NP_667041Link to BLAST:NP_667041.2

Chromosomal Locations for CCDS 23048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39484307 39485251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAATGATATGACATCAGGAAACTATTGCACAGTGACTGAGTTCTTCTTGGCAGGGCTCTCAGAGAAGC
CAGAACTCCAGCTGCCCCTCTTCTTCCTTTTCATAGGAATTTATATGATCACTGTAGCAGGGAATTTGGG
CATGATCATACTGATTGGGCTCAGTTCCCACCTGCACACACCCATGTACTATTTCCTCAGCAGTCTGTCC
TTCATTGACTTCTGTCAGTCCACAGTCGTTACCCCTAAAATGCTAGTGAACTTTGTGACAGAGAAGAACA
TCATATCCTACCCTGGATGCATGACTCAGCTCTACTTCTTCCTCATATTTGCAATTGCGGAGTGTTACAT
TTTAGCTGCAATGGCATATGACCGCTATGTTGCTATCTGTAACCCATTGCTTTACAATGTAACCATGTCC
TATCAAATTTACATTTTCCTAATTTCAGGAGTGTATATTATTGGTGTGATCTGTGCATCAGCTCACACAG
GCTTCATGGTTAGAATTCGATTCTGCAAATTAGATGTGATCAACCACTATTTCTGTGACCTTCTTCCCCT
CTTGAAGCTTGCATGCTCTAATACCTATATCAATGAAATGTTGATTCTATTTTTTGGGACACTGAACATC
TTTGTCCCAATCCTGACCATTATTACTTCCTACATCTTCATTATTGCCAGCATCCTCCGCATTCGCTCCA
CTGAAGGCAGGTCTAAAGCCTTCAGTACTTGCAGTTCTCACATCTTGGCTGTTGCTGTCTTCTTTGGATC
TCTAGCATTCATGTACCTTCAGCCATCATCAGTCAGCTCCATGGACCAAGGGAAAGTGTCCTCTGTGTTT
TATACCATTGTTGTTCCCATGCTGAACCCCTTGATCTACAGTCTGAGGAATAAAGATGTTGCTGTTGCCT
TGAAAAAAATAATTGAAAGAAAAACATTTATGTAG

Translation (314 aa):
MNDMTSGNYCTVTEFFLAGLSEKPELQLPLFFLFIGIYMITVAGNLGMIILIGLSSHLHTPMYYFLSSLS
FIDFCQSTVVTPKMLVNFVTEKNIISYPGCMTQLYFFLIFAIAECYILAAMAYDRYVAICNPLLYNVTMS
YQIYIFLISGVYIIGVICASAHTGFMVRIRFCKLDVINHYFCDLLPLLKLACSNTYINEMLILFFGTLNI
FVPILTIITSYIFIIASILRIRSTEGRSKAFSTCSSHILAVAVFFGSLAFMYLQPSSVSSMDQGKVSSVF
YTIVVPMLNPLIYSLRNKDVAVALKKIIERKTFM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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