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Report for CCDS23070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23070.1 Public Mus musculus 9 Or10g9 23 108 98 CCDS HistoryNCBI Gene:259112Re-query CCDS DB by CCDS ID:23070.1Re-query CCDS DB by GeneID:259112See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080835.3 ENSMUSP00000079648.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080835.3Link to Ensembl Protein Viewer:ENSMUSP00000079648.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080835Re-query CCDS DB by Protein ID:ENSMUSP00000079648
Original member Current member EBI ENSMUST00000215523.1 ENSMUSP00000148903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215523.1Link to Ensembl Protein Viewer:ENSMUSP00000148903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215523Re-query CCDS DB by Protein ID:ENSMUSP00000148903
Original member Current member NCBI NM_147108.2 NP_667319.1 Accepted alive Link to Nucleotide Sequence:NM_147108.2Link to Protein Sequence:NP_667319.1Re-query CCDS DB by Nucleotide ID:NM_147108Re-query CCDS DB by Protein ID:NP_667319Link to BLAST:NP_667319.1

Chromosomal Locations for CCDS 23070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40000290 40001225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTCAAATGTGACTCTAGTGACCACATTCTTCCTCTCAGGTATTCCCCATCCACCAGCCCTGGACACCA
TGCTCTTTGTAGCCTTCTTGGTGATTTACATTCTCACTGTGCTGGGCAACTTCCTGATTCTGATGGTAAT
CAGGGTGGACTCCCACCTCCACACACCCATGTACTACTTCCTCACCAACCTCTCCTTTATTGATATGTGG
TTCTCCACAGTCACAGTACCCAAAATGTTGATGACGTTGGTTTCCCCAAGGGGAGGGGCTATCTCCTTCC
ATAGCTGTGTGGCACAGCTCTATTGCTTCCACTTCCTGGGTAGCACCGAGTGTTTCCTGTACACTGTCAT
GTCCTATGATCGCTACCTGGCCATCAGTTACCCACTCAGGTACAGCAGCATGATGAGTGGGAGAGTGTGT
GCCCTCCTGGCAGCAGGAACATGGATCACTGGTTCCCTGCACTCTGCTGTCCAGACTACATTGACCTTCC
GTTTGCCCTACTGTGGTCCCAACCAGATCCAGCATTATTTCTGTGATGCACCTCCCATCCTCAAGCTGGC
TTGTGCAGACACCTCAGCCAATGAGATGGTCATCTTTGTGAACATCGGGGTAGTGGCTTCGGGCTGCTTT
CTTCTGATTTCGCTGTCCTATGTGTCCATTGTCTGCTCCATCCTGAGGATTCGTACTTCAGAGGGCCGGC
ACAGAGCTTTCCAGACATGTGCCTCACACTGCATCGTGGTCCTCTGTTTCTTTGTGCCCTGTGTTTTTAT
CTACCTGAGGCCAGGCTCCAGGGATGCTGTGGATGGAGTTGTGGCTGTTTTCTACACTGTGTTGACACCC
CTACTCAACCCTGTTGTGTACACCCTGAGGAACAAAGAGGTGAAGAAAGCACTAGTTAAACTCAAAGACA
AAGTAGCATATTCTCAGAGCCAGTAA

Translation (311 aa):
MSNVTLVTTFFLSGIPHPPALDTMLFVAFLVIYILTVLGNFLILMVIRVDSHLHTPMYYFLTNLSFIDMW
FSTVTVPKMLMTLVSPRGGAISFHSCVAQLYCFHFLGSTECFLYTVMSYDRYLAISYPLRYSSMMSGRVC
ALLAAGTWITGSLHSAVQTTLTFRLPYCGPNQIQHYFCDAPPILKLACADTSANEMVIFVNIGVVASGCF
LLISLSYVSIVCSILRIRTSEGRHRAFQTCASHCIVVLCFFVPCVFIYLRPGSRDAVDGVVAVFYTVLTP
LLNPVVYTLRNKEVKKALVKLKDKVAYSQSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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