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Report for CCDS23088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23088.1 Public Mus musculus 9 Tbcel 23 108 98 CCDS HistoryNCBI Gene:272589Re-query CCDS DB by CCDS ID:23088.1Re-query CCDS DB by GeneID:272589See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066148.11 ENSMUSP00000067882.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066148.11Link to Ensembl Protein Viewer:ENSMUSP00000067882.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066148Re-query CCDS DB by Protein ID:ENSMUSP00000067882
Original member Current member EBI ENSMUST00000125995.7 ENSMUSP00000114721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125995.7Link to Ensembl Protein Viewer:ENSMUSP00000114721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125995Re-query CCDS DB by Protein ID:ENSMUSP00000114721
Original member Current member EBI ENSMUST00000138506.7 ENSMUSP00000116616.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138506.7Link to Ensembl Protein Viewer:ENSMUSP00000116616.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138506Re-query CCDS DB by Protein ID:ENSMUSP00000116616
Original member Current member EBI ENSMUST00000128959.7 ENSMUSP00000121164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128959.7Link to Ensembl Protein Viewer:ENSMUSP00000121164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128959Re-query CCDS DB by Protein ID:ENSMUSP00000121164
Original member NCBI NM_001357657.2 NP_001344586.1 Updated not alive Link to Nucleotide Sequence:NM_001357657.2Link to Protein Sequence:NP_001344586.1Re-query CCDS DB by Nucleotide ID:NM_001357657Re-query CCDS DB by Protein ID:NP_001344586
Current member NCBI NM_001357657.3 NP_001344586.1 Accepted alive Link to Nucleotide Sequence:NM_001357657.3Link to Protein Sequence:NP_001344586.1Re-query CCDS DB by Nucleotide ID:NM_001357657Re-query CCDS DB by Protein ID:NP_001344586Link to BLAST:NP_001344586.1
Original member NCBI NM_173038.4 NP_766626.1 Updated not alive Link to Nucleotide Sequence:NM_173038.4Link to Protein Sequence:NP_766626.1Re-query CCDS DB by Nucleotide ID:NM_173038Re-query CCDS DB by Protein ID:NP_766626
Current member NCBI NM_173038.5 NP_766626.1 Accepted alive Link to Nucleotide Sequence:NM_173038.5Link to Protein Sequence:NP_766626.1Re-query CCDS DB by Nucleotide ID:NM_173038Re-query CCDS DB by Protein ID:NP_766626Link to BLAST:NP_766626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344586.1 424 Q8C5W3-1 424 100% 0 0
NP_766626.1 424 Q8C5W3-1 424 100% 0 0

Chromosomal Locations for CCDS 23088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 42415831 42416149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42437115 42437231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42439097 42439223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42442819 42443075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42444407 42444588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42449924 42450063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42451613 42451745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGACCAGCCTAGTGGGAGAAGTTTCATGCAAGTATTGTGTGAAAAATACAGTCCTGAAAACTTCCCTT
ACCGCCGTGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAAAGATCGCCT
CAACCTCCCGAGCGTGCTCGTGTTGAACAGCTGCGGCATTACCTGCGCGGGAGATGAAAGAGAAATCGCA
GCCTTCTGTGCTCACGTGTCAGAACTCGATCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTCAGTA
AGATTGTGTCAAATGTTCCTCAGCTGGAGTTTCTAAACCTGAGTTCCAATCCTCTGAGTCTGTCAGTTCT
AGAAAGAACATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGG
GAAACAGTGCACACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTCTTCCTGTGCCTTAATGACTATG
AAACAGTGTCTTGTCCTTCTGTCTGCTGTCATTCCCTCAAGCTCCTACACATCACAGACAACAACCTCCA
AGACTGGACTGAAATCCGAAAGCTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTCCTGGCCAACAAT
CACTTGAATGCAATCGAGGAGCCTGCTGACTCCCTGGCTAGGTTGTTCCCTAATCTGCGGTCCATCAGCC
TCCACAAGTCAGGTTTGCAGTCCTGGGAAGACATTGACAAACTAAATTCATTCCCCAAGCTTGAAGAAGT
GAGATTGCTAGGAATTCCTCTTCTACAGCCGTATACCACCGAGGAACGCAGGAAATTGGTGGTGGCCAGA
TTGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGACGGATGGTGAGCGAGAGGATTCCGAGAGGTTTT
TCATCCGGTACTACGTGGATGTTCCTCAGGAGGAAGTGCCATTCAGGTATCATGAGCTCATTACAAAATA
TGGGAAATTGGAGCCTTTGGCAGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGTAGAAGTTCACTTC
AATGACCAAGTGGAGGAAATGAGCATCCGCCTGGACCAGACAGTAGCCGAACTGAAGAAACAGCTAAAGA
CCCTGGTGCAGTTGCCCACCAGCAGCATGCTTCTCTACTACTTTGACCACGAGGCCCCGTTTGGCCCAGA
GGAGATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAGGGATGGAGATAAAATTTTTGTGGAA
TCAAAAACAAAATAA

Translation (424 aa):
MDQPSGRSFMQVLCEKYSPENFPYRRGPGVGVHVPATPQGSPMKDRLNLPSVLVLNSCGITCAGDEREIA
AFCAHVSELDLSDNKLQDWHEVSKIVSNVPQLEFLNLSSNPLSLSVLERTCAGSFSGVRKLVLNNSKASW
ETVHTILQELPELEELFLCLNDYETVSCPSVCCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANN
HLNAIEEPADSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEERRKLVVAR
LPSVSKLNGSVVTDGEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLAEVDLRPQSSAKVEVHF
NDQVEEMSIRLDQTVAELKKQLKTLVQLPTSSMLLYYFDHEAPFGPEEMKYSSRALHSFGIRDGDKIFVE
SKTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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