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Report for CCDS23120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23120.1 Public Mus musculus 9 Tmem25 23 108 98 CCDS HistoryNCBI Gene:71687Re-query CCDS DB by CCDS ID:23120.1Re-query CCDS DB by GeneID:71687See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002100.7 ENSMUSP00000002100.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002100.7Link to Ensembl Protein Viewer:ENSMUSP00000002100.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002100Re-query CCDS DB by Protein ID:ENSMUSP00000002100
Original member Current member NCBI NM_001357384.1 NP_001344313.1 Accepted alive Link to Nucleotide Sequence:NM_001357384.1Link to Protein Sequence:NP_001344313.1Re-query CCDS DB by Nucleotide ID:NM_001357384Re-query CCDS DB by Protein ID:NP_001344313Link to BLAST:NP_001344313.1
Original member Current member NCBI NM_001357385.1 NP_001344314.1 Accepted alive Link to Nucleotide Sequence:NM_001357385.1Link to Protein Sequence:NP_001344314.1Re-query CCDS DB by Nucleotide ID:NM_001357385Re-query CCDS DB by Protein ID:NP_001344314Link to BLAST:NP_001344314.1
Original member Current member NCBI NM_027865.3 NP_082141.1 Accepted alive Link to Nucleotide Sequence:NM_027865.3Link to Protein Sequence:NP_082141.1Re-query CCDS DB by Nucleotide ID:NM_027865Re-query CCDS DB by Protein ID:NP_082141Link to BLAST:NP_082141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344313.1 365 Q9DCF1-1 365 100% 0 0
NP_001344314.1 365 Q9DCF1-1 365 100% 0 0
NP_082141.1 365 Q9DCF1-1 365 100% 0 0

Chromosomal Locations for CCDS 23120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44794975 44795048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795191 44795277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795410 44795510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795682 44795712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795996 44796127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44796324 44796614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44798121 44798432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44798664 44798733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGAATTGCCTCTAAGCCAAGCTACCCTCCGGCACACACTGCTGCTCCTTCCTGCCCTCTTAAGTTCAG
GTCAAGGGGAGCTGGCGCCGCAAATTGATGGTCAGACCTGGGCTGAGAGAGCGCTTAGGGAGAATGAGCA
CCATGCCTTCACCTGTCGGGTTGCAGGAGGTTCTGCCACTCCCCGATTAGCCTGGTACCTGGATGGACAG
CTACAGGAGGCCACCACCTCCCGACTGCTGAGTGTGGGTGGGGACGCCTTCTCTGGAGGAACCAGCACTT
TCACTGTTACTGCCCAGCGCTCCCAACATGAGCTTAACTGCTCCCTGCAGGACCCAGGGAGTGGCCGGCC
AGCCAATGCCTCTGTCATCCTCAATGTGCAATTCAAACCAGAGATTGCCCAGGTTGGAGCCAAATACCAG
GAAGCTCAGGGCCCAGGCCTTCTGGTTGTCCTGTTTGCCCTGGTGCGGGCCAACCCACCTGCCAATGTCA
CCTGGATTGACCAGGATGGGCCAGTGACTGTCAATGCCTCTGACTTCCTGGTGCTGGATGCTCAGAACTA
TCCCTGGCTCACCAACCACACTGTGCAGCTGCAGCTCCGGAGCTTGGCACACAACCTCTCGGTGGTGGCC
ACCAATGACGTGGGTGTCACTAGCGCTTCCCTTCCAGCTCCAGGGCTCCTGGCCACACGGATAGAAGTGC
CACTGCTGGGCATCGTTGTGGCTGGAGGACTTGCCTTGGGCACTCTAGTGGGGTTCAGTACCTTGGTGGC
CTGCCTGGTCTGCAGGAAAGAGAAGAAAACAAAAGGCCCCTCCCGGCGTCCTTCTCTGATATCTAGTGAC
TCCAATAACCTGAAACTGAATAATGTGCGCCTGCCACGGGAGAACATGTCCCTCCCATCCAACCTTCAGC
TCAATGACCTCACTCCAGATCTCAGAGGGAAAGCAACAGAGCGGCCAATGGCTCAGCATAGCAGCCGTCC
AGAGCTTCTAGAAGCCGAGCCTGGTGGCCTCCTCACCAGCCGAGGTTTCATCCGTCTCCCGATGTTGGGC
TACATCTACCGTGTGTCCAGTGTAAGCAGTGATGAGATTTGGCTCTGA

Translation (365 aa):
MELPLSQATLRHTLLLLPALLSSGQGELAPQIDGQTWAERALRENEHHAFTCRVAGGSATPRLAWYLDGQ
LQEATTSRLLSVGGDAFSGGTSTFTVTAQRSQHELNCSLQDPGSGRPANASVILNVQFKPEIAQVGAKYQ
EAQGPGLLVVLFALVRANPPANVTWIDQDGPVTVNASDFLVLDAQNYPWLTNHTVQLQLRSLAHNLSVVA
TNDVGVTSASLPAPGLLATRIEVPLLGIVVAGGLALGTLVGFSTLVACLVCRKEKKTKGPSRRPSLISSD
SNNLKLNNVRLPRENMSLPSNLQLNDLTPDLRGKATERPMAQHSSRPELLEAEPGGLLTSRGFIRLPMLG
YIYRVSSVSSDEIWL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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