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Report for CCDS23231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23231.1 Public Mus musculus 9 Edc3 23 108 98 CCDS HistoryNCBI Gene:353190Re-query CCDS DB by CCDS ID:23231.1Re-query CCDS DB by GeneID:353190See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043990.13 ENSMUSP00000049146.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043990.13Link to Ensembl Protein Viewer:ENSMUSP00000049146.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043990Re-query CCDS DB by Protein ID:ENSMUSP00000049146
Original member NCBI NM_153799.3 NP_722494.1 Updated not alive Link to Nucleotide Sequence:NM_153799.3Link to Protein Sequence:NP_722494.1Re-query CCDS DB by Nucleotide ID:NM_153799Re-query CCDS DB by Protein ID:NP_722494
Current member NCBI NM_153799.4 NP_722494.1 Accepted alive Link to Nucleotide Sequence:NM_153799.4Link to Protein Sequence:NP_722494.1Re-query CCDS DB by Nucleotide ID:NM_153799Re-query CCDS DB by Protein ID:NP_722494Link to BLAST:NP_722494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722494.1 508 Q8K2D3 508 100% 0 0

Chromosomal Locations for CCDS 23231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57713398 57713561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57715948 57716267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57727186 57727521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57739890 57740043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57744585 57744802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57748161 57748495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGCTATGGATTGGCTAGGCAGTATTGTGTCCATCAACTGTGGAGATAGCCTGGGCGTCTACCAGGGAA
GAGTATCAGCAGTGGATCAGGTCAGCCAGACCATTTCTCTTACTCGGCCCTTCCACAATGGGGTGAAGTG
TCTTGTACCAGAAGTCACCTTTCGGGCAGGTGATATTACAGAATTAAAAATTTTGGAGATACCAGGTCCT
GGAGACAACCAGCAGGTTGGAGACCTTCATCAGACAGAATTAGGCCCTTCTGGTGTTGGGTACCAAATGA
GTATCAGTCAGAATGGAACAGGCAAGGTGGTCAAGAAGCCAGCCTCTTCCAGTAGTGCCCCTCAGAGCAT
CCCTAAGAGGACAGATGTGAAGAGCCAGGATGTTGCCATTTCTCCTCAGCAGCAGCAGTGCTCAAAGAGT
TATGTGGACAGGCACATGGAATCTTTGAGTCAGTCCAAAAGCTTCCGTCGTCGGCACAACTCCTGGTCAT
CTAGTAGCAGGCACCCAAACCAGGCAACTCCAAAGAAAAGTGGTTTAAAAAATGGCCAGATGAAGAATAA
AGATGACGAGTGCTTTGGAGACGATATCGAGGAGCTCCCAGACACGGACTTTGACTTTGAGGGGAACCTG
GCCCTGTTTGACAAGGCGGCTGTGTTTGAGGAGATCGACACTTACGAGAGGAGAAGTGGCTCCCGTTCTC
GGGGTGTCCCAAATGAACGTCCTGCTAGGTACCGCCATGATGAAAACATCCTGGAATCGGAGCCGATTGT
GTACCGTAGGATCACAGTACCACACAGCGTGAGCAAGGAGTTCTGCACGGACTCTGGCCTGGTAGTCCCA
AGTGTTTCCTATGAGCTACATAAAAAGCTGTTGTCTGTGGCTGAGAAGCATGGGCTGACCTTAGAGCGGA
GACTTGAGATGACTGGTGTGTGTGCCAGTCAGATGGCGCTGACTCTCCTTGGAGGACCCAACAGGTTGAA
TCCTAAGAATGTCCACCAGAGGCCCACAGTAGCTCTCTTGTGCGGCCCCCATGTGAAGGGGGCTCAGGGC
ATCAGTTGTGGGAGGCACCTCGCCAACCATGATGTGCAAGTCATCCTCTTCCTGCCCAACTTTGTCAAGA
TGCTGGAGTCTATTACCAACGAGCTGTCTCTCTTCAGCAAGACCCAAGGGCAGCAAGTGTCTAGCCTAAG
AGATCTCCCTGCTAGCCCTGTGGACCTGGTTATCAACTGCCTGGATTGTCCTGAGAATGCCTTCCTGCGG
GATCAGCCCTGGTACAAGGCAGCTGTGGCCTGGGCCAACCAGAACCGGGCACCAGTGCTCAGCATAGACC
CTCCTGTGCATGAAGTTGAACAGGGCATTGATGCCAAATGGTCCCTGGCACTGGGCCTGCCTCTGCCACT
CGGGGAGCACGCAGGCCGAGTCTATTTGTGTGACATTGGCATTCCCCAGCAAGTCTTCCAGGAGGTTGGC
ATCAACTACCATTCACCTTTTGGCTGCAAATTTGTCATTCCCCTACACTCTGCCTAG

Translation (508 aa):
MAMDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKILEIPGP
GDNQQVGDLHQTELGPSGVGYQMSISQNGTGKVVKKPASSSSAPQSIPKRTDVKSQDVAISPQQQQCSKS
YVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECFGDDIEELPDTDFDFEGNL
ALFDKAAVFEEIDTYERRSGSRSRGVPNERPARYRHDENILESEPIVYRRITVPHSVSKEFCTDSGLVVP
SVSYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQG
ISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLRDLPASPVDLVINCLDCPENAFLR
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRVYLCDIGIPQQVFQEVG
INYHSPFGCKFVIPLHSA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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