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Report for CCDS23254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23254.1 Public Mus musculus 9 Senp8 23 108 98 CCDS HistoryNCBI Gene:71599Re-query CCDS DB by CCDS ID:23254.1Re-query CCDS DB by GeneID:71599See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051039.4 ENSMUSP00000054509.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051039.4Link to Ensembl Protein Viewer:ENSMUSP00000054509.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051039Re-query CCDS DB by Protein ID:ENSMUSP00000054509
Original member Current member EBI ENSMUST00000163586.8 ENSMUSP00000129441.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163586.8Link to Ensembl Protein Viewer:ENSMUSP00000129441.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163586Re-query CCDS DB by Protein ID:ENSMUSP00000129441
Original member Current member EBI ENSMUST00000177963.7 ENSMUSP00000137228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177963.7Link to Ensembl Protein Viewer:ENSMUSP00000137228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177963Re-query CCDS DB by Protein ID:ENSMUSP00000137228
Original member Current member EBI ENSMUST00000217093.1 ENSMUSP00000150601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217093.1Link to Ensembl Protein Viewer:ENSMUSP00000150601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217093Re-query CCDS DB by Protein ID:ENSMUSP00000150601
Original member Current member NCBI NM_001172068.1 NP_001165539.1 Accepted alive Link to Nucleotide Sequence:NM_001172068.1Link to Protein Sequence:NP_001165539.1Re-query CCDS DB by Nucleotide ID:NM_001172068Re-query CCDS DB by Protein ID:NP_001165539Link to BLAST:NP_001165539.1
Original member Current member NCBI NM_001172069.1 NP_001165540.1 Accepted alive Link to Nucleotide Sequence:NM_001172069.1Link to Protein Sequence:NP_001165540.1Re-query CCDS DB by Nucleotide ID:NM_001172069Re-query CCDS DB by Protein ID:NP_001165540Link to BLAST:NP_001165540.1
Original member Current member NCBI NM_001172070.1 NP_001165541.1 Accepted alive Link to Nucleotide Sequence:NM_001172070.1Link to Protein Sequence:NP_001165541.1Re-query CCDS DB by Nucleotide ID:NM_001172070Re-query CCDS DB by Protein ID:NP_001165541Link to BLAST:NP_001165541.1
Original member Current member NCBI NM_027838.3 NP_082114.1 Accepted alive Link to Nucleotide Sequence:NM_027838.3Link to Protein Sequence:NP_082114.1Re-query CCDS DB by Nucleotide ID:NM_027838Re-query CCDS DB by Protein ID:NP_082114Link to BLAST:NP_082114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165539.1 221 Q9D2Z4 221 100% 0 0
NP_001165540.1 221 Q9D2Z4 221 100% 0 0
NP_001165541.1 221 Q9D2Z4 221 100% 0 0
NP_082114.1 221 Q9D2Z4 221 100% 0 0

Chromosomal Locations for CCDS 23254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59737167 59737832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGACCCTGTGGTCTTGAGTTATATGGACAGTCTATTGCGGCAATCAGATGTCTCACTATTGGACCCTC
CAAGCTGGCTCAACGACCACATTATTGGGTTTGCCTTTGAATACTTTGCCAATAGTCAGTTTCATGACTG
CTCAGACCATGTCTGTTTCATCAGCCCTGAAGTCACCCAGTTCATTAAGTGCACCAGCAGCCCTGCAGAA
ATTGCCATGTTCCTTGAACCCCTGGATCTTCCCCACAAAAGAGTGGTATTTTTAGCCATCAATGATAATT
CTAACCAGGCAGCCGGAGGTACCCACTGGAGTTTGTTGGTTTATCTCCAAGATAAAAATAGCTTCTTTCA
TTATGATTCCCATAGCAGGAGCAACTCAATCCATGCAAAGCAGGTAGCAGAGAAACTGAAGGCTTTCTTA
GGCAGCAAAGGAGACAAACTGGTCTTTGTGGAAGAGAAAGCCCCAGCTCAAGAGAACAGCTATGACTGTG
GGATGTACGTGATATGTAACACCGAGGCCTTGTGTCAGAGTCTCTTTAGACGGCAGCCAGAGTCCCCGCT
GCAGCTACTCACCCCGACATACATCACAAAGAAGAGAGGAGAATGGAAAGATCTAATTGCCAGACTTGCT
AAAAAAAACGAAGTAGCTACTGAAGAATGCTCGTGA

Translation (221 aa):
MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQFIKCTSSPAE
IAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSIHAKQVAEKLKAFL
GSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLLTPTYITKKRGEWKDLIARLA
KKNEVATEECS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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