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Report for CCDS23256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23256.1 Public Mus musculus 9 Thsd4 23 108 98 CCDS HistoryNCBI Gene:207596Re-query CCDS DB by CCDS ID:23256.1Re-query CCDS DB by GeneID:207596See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034829.5 ENSMUSP00000034829.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034829.5Link to Ensembl Protein Viewer:ENSMUSP00000034829.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034829Re-query CCDS DB by Protein ID:ENSMUSP00000034829
Original member Current member NCBI NM_172444.4 NP_766032.1 Accepted alive Link to Nucleotide Sequence:NM_172444.4Link to Protein Sequence:NP_766032.1Re-query CCDS DB by Nucleotide ID:NM_172444Re-query CCDS DB by Protein ID:NP_766032Link to BLAST:NP_766032.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766032.1 658 Q3UTY6-2 658 100% 0 0

Chromosomal Locations for CCDS 23256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59972396 59972538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59976188 59976332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59979769 59979948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59982724 59982897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59987259 59987432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59987925 59988129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59988964 59989093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59997006 59997281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59999941 60000037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60002851 60003026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60056851 60057055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60140987 60141058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGTTTGTCAGCTACCTGTTATTAACATTGTTCCACACTGAGACAGCAATGTTAGCAAGACCTGGGGGAG
AGAGCATTGGCTGTGACGACTTCCTGGGATCTGACAAAGTCTTGGACAAGTGCGGGGTGTGTGGAGGTGA
TAACACGGGCTGCCAGGTGGTGTCGGGAGTGTTCAAGCACGCCCTCACCAGCCTGGGCTACCACCGGGTT
GTAGAGATTCCCCAAGGAGCTACGAAAATTAACATTACAGAGATGCACAAGAGCAACAACTACTTAGCCT
TGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCGGGGAAGTACGAGGG
CGGAGGGACAATGTTCACCTACAAACGACCGAACGAGGTCTCCAGCACTGCGGGGGAGTCCTTTCTGGCT
GAGGGTCCCACTAATGAGATCCTGGATGTCTATATGATACACCAGCAGCCCAACCCAGGAGTCCACTATG
AGTACGTGATCATGAGGAATAATGCCATCAGCCCACAGGTGCCACCACACAGGAGACCAGGAGAACCTTT
CAATGGGCAGCTGGAAGAGGAAGACAGAGGCCAGGAGGACAGAGAAGAGAGGGAGAAGAACCAGGAAAAG
GAAGACTCACAAGTCGAGGCCCCTGAGGTATTCACGTCAGAATCCACGCAGACCTTCCCAGTCAGGCATC
CGGAGAGATTCCCTTCCCACCGACCAGACAACTTGGTGCCCCCAGCACCACAGCCCCCAAGGCGAAGCCG
GGACCACAACTGGAAGCAGCTGGGGACAACAGAATGCTCCACCACCTGTGGGAAAGGATCGCAGTACCCT
ATCTTCCGCTGCGTGCACAGAAACACACACGAGGAGGTTCCCGAGAGCTACTGTGACTCCAGCATGAAGC
CGACCCCAGAGGAGGAACCCTGCAACCTCTTCCCCTGCCCAGCCTTCTGGGACATCGGGGAGTGGTCGGA
GTGCAGCAAGACCTGTGGTCTGGGCATGCAGCACCGCCAGGTCCTGTGTCGCCAGGTGTATGCCAACCGT
AGCCTGACGGTGCAACCCTACCGCTGCCAGCACCTGGAGAAGCCAGAGACCACCAGCACCTGCCAGCTCA
AGATCTGCAGCGAGTGGCAGATTCGGACCGACTGGACCTCGTGCTCAGTGCCCTGTGGCGTGGGGCAGCG
GACCCGAGACGTGAAGTGTGTGAGCAACATCGGGGACATGGTGCATGACGAGGAGTGCAACATGAAGCTC
CGGCCAAATGACATCGAGAACTGTGACATGGGGCCCTGTGCGAAGAGCTGGTTCCTCACAGAGTGGAGTG
AAAGGTGCTCAGCGGAGTGTGGGGCAGGAGTGAGGACACGTTCAGTGGTGTGCATGACCAACCACGTCAG
CAGCCTGCCGTTGGAAGGCTGTGGGAACAACAGGCCAGTGGAGGCTACGCCGTGTGACAATGGGCCCTGC
ACAGGCAAGGTGGAGTGGTTCACTGGCAGCTGGAGTCAGTGTTCCATCGAGTGTGGCAGTGGGACACAGC
AGAGGGAAGTGATCTGTGTTAGGAAGAATGCAGACACCTTTGAAGTGCTAGACCCTTATGAGTGTTCATT
CCTGGAGAAGCCCCCAAGCCAGCAGGCCTGCCACCTCAAGCCTTGTGGAGCTAAATGGTTTAGCACAGAA
TGGAGCATGTGCTCCAAGAGCTGTCAGGGCGGATTCCGGGTGCGGGAAGTTCGGTGTCTCTCAGATGACA
TGACCCCAAGTAGCCTCTGCGACCCCCAGTTGAAACCAGAAGAGAGAGAGTCTTGTAACACTCAGGACTG
TGTCCCTGAAGTTGATGAAAACTGCAAGGACAAGTACTACAACTGCAACGTGGTGGTCCAGGCACGCCTC
TGTGTCTACAACTACTACAAGACTGCCTGCTGTGCCTCTTGCACCCGAGTGGCTAACAGACACGTGGGCT
TTCTGGGGAGCCGATAA

Translation (658 aa):
MFVSYLLLTLFHTETAMLARPGGESIGCDDFLGSDKVLDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRV
VEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEVSSTAGESFLA
EGPTNEILDVYMIHQQPNPGVHYEYVIMRNNAISPQVPPHRRPGEPFNGQLEEEDRGQEDREEREKNQEK
EDSQVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYP
IFRCVHRNTHEEVPESYCDSSMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANR
SLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDMVHDEECNMKL
RPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPVEATPCDNGPC
TGKVEWFTGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQACHLKPCGAKWFSTE
WSMCSKSCQGGFRVREVRCLSDDMTPSSLCDPQLKPEERESCNTQDCVPEVDENCKDKYYNCNVVVQARL
CVYNYYKTACCASCTRVANRHVGFLGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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