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Report for CCDS23262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23262.1 Public Mus musculus 9 Glce 23 108 98 CCDS HistoryNCBI Gene:93683Re-query CCDS DB by CCDS ID:23262.1Re-query CCDS DB by GeneID:93683See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034785.7 ENSMUSP00000034785.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034785.7Link to Ensembl Protein Viewer:ENSMUSP00000034785.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034785Re-query CCDS DB by Protein ID:ENSMUSP00000034785
Original member Current member EBI ENSMUST00000185675.6 ENSMUSP00000139949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185675.6Link to Ensembl Protein Viewer:ENSMUSP00000139949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185675Re-query CCDS DB by Protein ID:ENSMUSP00000139949
Original member Current member NCBI NM_001368304.1 NP_001355233.1 Accepted alive Link to Nucleotide Sequence:NM_001368304.1Link to Protein Sequence:NP_001355233.1Re-query CCDS DB by Nucleotide ID:NM_001368304Re-query CCDS DB by Protein ID:NP_001355233Link to BLAST:NP_001355233.1
Original member Current member NCBI NM_033320.5 NP_201577.3 Accepted alive Link to Nucleotide Sequence:NM_033320.5Link to Protein Sequence:NP_201577.3Re-query CCDS DB by Nucleotide ID:NM_033320Re-query CCDS DB by Protein ID:NP_201577Link to BLAST:NP_201577.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355233.1 618 Q9EPS3 618 100% 0 0
NP_201577.3 618 Q9EPS3 618 100% 0 0

Chromosomal Locations for CCDS 23262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 62060011 62061035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62068385 62068630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62070015 62070600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGCGTTGTTTGGCAGCTCGGGTCAACTATAAGACTTTGATTATCATCTGTGCGCTATTCACTTTGGTCA
CAGTACTTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATT
CAGAGTGGATGGATTAGAAAAAAGATCAGCAGCATCTGAAAGTAACCACTATGCCAACCACATAGCCAAA
CAGCAGTCAGAAGAGGCATTTCCTCAGGAACAACAGAAGGCACCCCCTGTTGTTGGGGGCTTCAATAGCA
ACGGGGGAAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGACTGTCTCATAAACGATGAGCACACCAT
TAAAGGGAGACGAGAGGGGAATGAAGTTTTCCTTCCATTCACTTGGGTAGAGAAATACTTTGATGTTTAT
GGAAAAGTGGTCCAGTATGACGGCTATGATCGATTTGAATTCTCTCATAGCTATTCCAAAGTCTATGCAC
AGAGATCACCTTATCACCCTGACGGTGTGTTTATGTCCTTTGAAGGCTACAATGTGGAAGTCCGAGACAG
AGTCAAATGTATAAGTGGAGTTGAAGGTGTGCCATTATCTACCCAGTGGGGGCCTCAAGGCTATTTCTAC
CCAATCCAGATTGCACAGTATGGGCTAAGTCATTACAGCAAGAATCTAACCGAGAAACCCCCTCACATAG
AAGTATATGAAACAGCAGAAGACAGGGACAGAAACATCAGACCTAATGAATGGACTGTGCCCAAGGGGTG
CTTCATGGCCAGTGTGGCAGACAAGTCTAGATCCACCAATGTTAAACAGTTTATTGCTCCAGAAACCAGT
GAAGGTGTGTCTTTGCAGCTGGGAAACACAAAAGACTTCATTATTTCATTTGACCTCAAGCTTTTAACAA
ATGGGAGTGTGTCTGTGGTTCTGGAGACCACAGAAAAGAATCAGCTCTTCACTGTGCATTATGTCTCAAA
CACCCAGCTGATTGCTTTCAGAGACAGGGACATATACTACGGCATTGGGCCCAGAACTTCATGGAGTACA
GTTACCAGAGACCTGGTCACTGACCTCAGGAAAGGAGTGGGCCTTTCTAACACAAAAGCTGTCAAGCCAA
CCAAAATCATGCCCAAAAAGGTGGTTAGGTTGATTGCAAAAGGGAAGGGATTCCTGGACAACATTACCAT
CTCAACCACAGCCCACATGGCTGCATTCTTTGCTGCAAGTGACTGGCTAGTGAGGAACCAGGATGAGAAA
GGTGGCTGGCCAATTATGGTGACCCGGAAGTTAGGGGAAGGGTTTAAATCTTTAGAACCAGGATGGTACT
CTGCCATGGCACAAGGGCAAGCCATCTCTACCTTAGTCAGGGCCTATCTTCTAACGAAAGACTATGTATT
CCTCAGTTCAGCTTTAAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTG
TTCATGAATAAACATGACTGGTATGAAGAATATCCAACCACACCTAGCTCTTTTGTTTTAAATGGCTTTA
TGTATTCTTTAATTGGGCTGTATGACCTAAAAGAAACAGCAGGGGAGACACTTGGGAAAGAAGCAAGGTC
CTTGTACGAGCGCGGCATGGAATCTCTTAAAGCCATGCTGCCCTTGTATGATACTGGCTCCGGGACCATC
TATGACCTCCGCCACTTCATGCTTGGCATTGCTCCCAACCTGGCCCGCTGGGACTATCACACCACCCACA
TTAACCAGCTGCAGCTGCTCAGCACCATCGATGAGTCCCCAATCTTCAAAGAATTTGTCAAGAGGTGGAA
AAGCTACCTTAAAGGCAGTAGGGCAAAGCACAACTAG

Translation (618 aa):
MRCLAARVNYKTLIIICALFTLVTVLLWNKCSSDKAIQFPRHLSSGFRVDGLEKRSAASESNHYANHIAK
QQSEEAFPQEQQKAPPVVGGFNSNGGSKVLGLKYEEIDCLINDEHTIKGRREGNEVFLPFTWVEKYFDVY
GKVVQYDGYDRFEFSHSYSKVYAQRSPYHPDGVFMSFEGYNVEVRDRVKCISGVEGVPLSTQWGPQGYFY
PIQIAQYGLSHYSKNLTEKPPHIEVYETAEDRDRNIRPNEWTVPKGCFMASVADKSRSTNVKQFIAPETS
EGVSLQLGNTKDFIISFDLKLLTNGSVSVVLETTEKNQLFTVHYVSNTQLIAFRDRDIYYGIGPRTSWST
VTRDLVTDLRKGVGLSNTKAVKPTKIMPKKVVRLIAKGKGFLDNITISTTAHMAAFFAASDWLVRNQDEK
GGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVRAYLLTKDYVFLSSALRATAPYKFPSEQHGVKAV
FMNKHDWYEEYPTTPSSFVLNGFMYSLIGLYDLKETAGETLGKEARSLYERGMESLKAMLPLYDTGSGTI
YDLRHFMLGIAPNLARWDYHTTHINQLQLLSTIDESPIFKEFVKRWKSYLKGSRAKHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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