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Report for CCDS23324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23324.1 Public Mus musculus 9 Lipc 23 108 98 CCDS HistoryNCBI Gene:15450Re-query CCDS DB by CCDS ID:23324.1Re-query CCDS DB by GeneID:15450See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034731.9 ENSMUSP00000034731.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034731.9Link to Ensembl Protein Viewer:ENSMUSP00000034731.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034731Re-query CCDS DB by Protein ID:ENSMUSP00000034731
Original member Current member NCBI NM_001324472.1 NP_001311401.1 Accepted alive Link to Nucleotide Sequence:NM_001324472.1Link to Protein Sequence:NP_001311401.1Re-query CCDS DB by Nucleotide ID:NM_001324472Re-query CCDS DB by Protein ID:NP_001311401Link to BLAST:NP_001311401.1
Original member Current member NCBI NM_008280.2 NP_032306.2 Accepted alive Link to Nucleotide Sequence:NM_008280.2Link to Protein Sequence:NP_032306.2Re-query CCDS DB by Nucleotide ID:NM_008280Re-query CCDS DB by Protein ID:NP_032306Link to BLAST:NP_032306.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311401.1 510 P27656 510 100% 0 0
NP_032306.2 510 P27656 510 100% 0 0

Chromosomal Locations for CCDS 23324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70798267 70798408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70802073 70802291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70803697 70803814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70812670 70812912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70816530 70816763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70818849 70818966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70820360 70820542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70823373 70823563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70934476 70934560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGGAAATCCCCTCCAAATCTCCATTTTCCTGGTGTTCTGCATCTTTATCCAATCAAGTGCTTGTGGAC
AAGGCGTGGGAACAGAGCCCTTTGGGAGAAGCCTTGGAGCTACTGAAGCTAGCAAGCCATTAAAGAAGCC
AGAGACCAGATTCCTGCTCTTCCAAGATGAAAACGATCGCCTGGGCTGTCGTCTCAGACCTCAGCACCCG
GAAACACTGCAGGAGTGTGGCTTCAACAGCTCTCAGCCGCTTATCATGATCATCCACGGGTGGTCGGTGG
ATGGCTTGCTAGAAAACTGGATCTGGAAGATAGTGAGTGCGCTGAAGTCCCGACAGTCCCAACCTGTGAA
TGTGGGGTTAGTGGACTGGATCTCCCTGGCATACCAGCACTACACCATTGCTGTTCAAAACACCCGTATT
GTGGGCCAGGACGTGGCTGCTCTTCTCCTATGGCTGGAGGAATCTGCGAAGTTTTCTCGGAGCAAAGTTC
ACCTAATTGGGTACAGCCTGGGAGCGCACGTCTCAGGGTTCGCAGGCAGCTCCATGGACGGGAAGAACAA
GATTGGAAGAATCACAGGGCTGGACCCTGCGGGCCCTATGTTTGAGGGAACGTCCCCCAACGAGCGCCTT
TCTCCTGATGATGCCAATTTTGTGGACGCCATTCATACCTTTACCAGGGAGCACATGGGCTTGAGTGTGG
GCATCAAGCAGCCCATTGCCCACTATGACTTCTACCCCAATGGGGGCTCCTTCCAGCCTGGCTGCCACTT
CCTGGAACTCTACAAACACATTGCAGAGCATGGCTTAAACGCCATAACCCAGACCATCAAATGTGCCCAT
GAGCGCTCCGTGCACCTCTTCATTGACTCCTTGCAACACAGTGACCTGCAGAGCATCGGCTTCCAGTGCA
GCGACATGGGCAGCTTCAGCCAAGGTCTATGCCTGAGCTGCAAGAAGGGCCGTTGCAACACTCTGGGTTA
TGACATCCGCAAGGACCGGTCAGGCAAGAGCAAGAGGCTCTTCCTCATCACGCGAGCCCAGTCTCCCTTC
AAAGTTTATCATTACCAGTTCAAGATCCAGTTCATCAATCAAATTGAGAAGCCGGTAGAGCCTACTTTTA
CCATGTCGCTGCTGGGAACAAAAGAAGAAATAAAGAGAATTCCCATCACCCTGGGCGAAGGAATTACCAG
CAATAAAACCTATTCCTTCCTTATCACACTGGACAAAGACATCGGCGAGTTGATCCTGCTCAAGTTCAAG
TGGGAAAACAGTGCAGTGTGGGCCAATGTGTGGAACACAGTGCAGACCATCATGCTATGGGGCATAGAAC
CTCACCACTCTGGCCTCATTCTGAAGACCATCTGGGTCAAAGCTGGAGAGACGCAGCAAAGAATGACATT
TTGCCCCGAAAATCTGGATGACCTCCAGCTTCACCCGAGCCAGGAGAAAGTCTTTGTGAACTGTGAAGTG
AAGTCAAAAAGACTGACTGAATCGAAAGAGCAGATGAGTCAAGAGACCCATGCAAAAAAATAA

Translation (510 aa):
MGNPLQISIFLVFCIFIQSSACGQGVGTEPFGRSLGATEASKPLKKPETRFLLFQDENDRLGCRLRPQHP
ETLQECGFNSSQPLIMIIHGWSVDGLLENWIWKIVSALKSRQSQPVNVGLVDWISLAYQHYTIAVQNTRI
VGQDVAALLLWLEESAKFSRSKVHLIGYSLGAHVSGFAGSSMDGKNKIGRITGLDPAGPMFEGTSPNERL
SPDDANFVDAIHTFTREHMGLSVGIKQPIAHYDFYPNGGSFQPGCHFLELYKHIAEHGLNAITQTIKCAH
ERSVHLFIDSLQHSDLQSIGFQCSDMGSFSQGLCLSCKKGRCNTLGYDIRKDRSGKSKRLFLITRAQSPF
KVYHYQFKIQFINQIEKPVEPTFTMSLLGTKEEIKRIPITLGEGITSNKTYSFLITLDKDIGELILLKFK
WENSAVWANVWNTVQTIMLWGIEPHHSGLILKTIWVKAGETQQRMTFCPENLDDLQLHPSQEKVFVNCEV
KSKRLTESKEQMSQETHAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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