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Report for CCDS23383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23383.1 Public Mus musculus 9 Me1 23 108 98 CCDS HistoryNCBI Gene:17436Re-query CCDS DB by CCDS ID:23383.1Re-query CCDS DB by GeneID:17436See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034989.14 ENSMUSP00000034989.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034989.14Link to Ensembl Protein Viewer:ENSMUSP00000034989.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034989Re-query CCDS DB by Protein ID:ENSMUSP00000034989
Original member Current member NCBI NM_008615.2 NP_032641.2 Accepted alive Link to Nucleotide Sequence:NM_008615.2Link to Protein Sequence:NP_032641.2Re-query CCDS DB by Nucleotide ID:NM_008615Re-query CCDS DB by Protein ID:NP_032641Link to BLAST:NP_032641.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032641.2 572 P06801 572 100% 0 0

Chromosomal Locations for CCDS 23383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 86582737 86582907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86586963 86587061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86594444 86594617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86596056 86596198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86598719 86598824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86611853 86611966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86613541 86613638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86619725 86619834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86646311 86646414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86650868 86651029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86654643 86654718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86677864 86678013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86679819 86679952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86695673 86695750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGAGCCCCGAGCCCCCCGCCGCCGACACACCCACCAGCGCGGCTACCTGCTGACGCGGGACCCGCATC
TCAACAAGGACTTGGCTTTTACTCTGGAAGAGAGACAGCAGTTGAACATTCATGGATTGTTGCCGCCCTG
CATCATCAGCCAGGAGCTCCAGGTCCTTAGAATAATTAAGAATTTCGAACGACTGAACTCTGACTTCGAC
AGGTATCTCCTGTTAATGGACCTGCAAGACAGAAATGAGAAGCTCTTCTACAGCGTGCTCATGTCTGATG
TTGAAAAGTTCATGCCTATTGTTTACACCCCCACCGTGGGCCTCGCATGCCAGCAGTACAGTTTGGCATT
CCGGAAGCCAAGAGGCCTCTTTATTAGTATCCATGACAAAGGGCACATTGCTTCAGTTCTTAATGCATGG
CCAGAGGATGTCGTCAAGGCTATTGTGGTAACTGATGGAGAGCGCATCCTTGGCTTGGGAGACCTTGGCT
GTAATGGGATGGGCATCCCTGTGGGTAAACTGGCCCTGTACACGGCATGTGGAGGGGTGAACCCACAACA
GTGTCTACCCATCACTTTGGATGTGGGAACAGAAAATGAGGAGTTACTTAAGGATCCACTGTACATCGGG
CTGCGGCACCGGCGAGTCAGAGGCCCTGAGTATGACGCCTTCCTGGATGAGTTCATGGAGGCAGCGTCTT
CCAAATATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATCGGAATGCATTTCGTCTCCTGAA
CAAGTATCGAAACAAGTATTGCACATTTAACGATGATATTCAAGGAACAGCGTCTGTTGCGGTTGCGGGT
CTCCTTGCAGCTCTTCGAATAACCAAGAACAAGCTCTCTGATCAGACAGTGCTGTTCCAGGGAGCTGGAG
AGGCTGCCTTGGGGATTGCTCACTTGGTTGTTATGGCCATGGAGAAAGAAGGTTTATCAAAGGAGAATGC
TAGAAAGAAGATATGGTTGGTTGACTCAAAAGGACTAATAGTTAAGGGTCGTGCATCTCTCACAGAAGAG
AAAGAGGTGTTTGCCCATGAACATGAAGAAATGAAGAATCTGGAAGCCATTGTTCAAAAGATAAAACCAA
CTGCCCTCATAGGAGTTGCTGCAATTGGTGGTGCTTTCACTGAACAAATTCTCAAGGATATGGCTGCCTT
CAACGAGCGGCCCATCATCTTTGCTTTGAGTAATCCGACCAGCAAAGCGGAGTGCTCTGCAGAGCAGTGC
TACAAGGTGACCAAGGGACGTGCAATCTTTGCCAGCGGCAGTCCTTTTGATCCAGTCACTCTCCCAGATG
GACGGACTCTGTTTCCTGGCCAAGGCAACAATTCCTACGTGTTCCCTGGAGTTGCTCTTGGGGTGGTGGC
CTGCGGACTGAGACACATCGATGATAAGGTCTTCCTCACCACTGCTGAGGTCATATCTCAGCAAGTGTCA
GATAAACACCTGCAAGAAGGCCGGCTCTATCCTCCTTTGAATACCATTCGAGGCGTTTCGTTGAAAATTG
CAGTAAAGATTGTGCAAGATGCATACAAAGAAAAGATGGCCACTGTTTATCCTGAACCCCAAAACAAAGA
AGAATTTGTCTCCTCCCAGATGTACAGCACTAATTATGACCAGATCCTACCTGATTGTTATCCGTGGCCT
GCAGAAGTCCAGAAAATACAGACCAAAGTCAACCAGTAA

Translation (572 aa):
MEPRAPRRRHTHQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFD
RYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAW
PEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIG
LRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLNKYRNKYCTFNDDIQGTASVAVAG
LLAALRITKNKLSDQTVLFQGAGEAALGIAHLVVMAMEKEGLSKENARKKIWLVDSKGLIVKGRASLTEE
KEVFAHEHEEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQC
YKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVS
DKHLQEGRLYPPLNTIRGVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDCYPWP
AEVQKIQTKVNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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