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Report for CCDS23394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23394.1 Public Mus musculus 9 Mthfs 23 108 98 CCDS HistoryNCBI Gene:107885Re-query CCDS DB by CCDS ID:23394.1Re-query CCDS DB by GeneID:107885See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085256.7 ENSMUSP00000082354.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085256.7Link to Ensembl Protein Viewer:ENSMUSP00000082354.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000085256Re-query CCDS DB by Protein ID:ENSMUSP00000082354
Original member Current member NCBI NM_026829.2 NP_081105.1 Accepted alive Link to Nucleotide Sequence:NM_026829.2Link to Protein Sequence:NP_081105.1Re-query CCDS DB by Nucleotide ID:NM_026829Re-query CCDS DB by Protein ID:NP_081105Link to BLAST:NP_081105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081105.1 203 Q9D110 203 100% 0 0

Chromosomal Locations for CCDS 23394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89211195 89211311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89215209 89215470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89239842 89240074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGGCGGTCACGGTAAACAGTGCCAAGCGGGGCCTGCGGGCCGAGCTGAAGCAGCGCTTGAGGGCCT
TGAGCGCGGAGGAACGGCTGCGCCAGTCTCTCCTCCTCACGCAGAAGGTGATTGCCCACAATCAGTATCA
GAATTCCAAAAGAATTTCCATCTTTCTAAGCATGCAAGATGAAGTTGAGACGGAAGTAATCATCAAGGAC
ATTTTCAAACAAGGCAAAATCTGCTTCATCCCTCGGTACCAATTCCAGAGCAATCACATGGACATGGTGA
GGTTAACGTCATCTGAAGAAATTGCTTTACTTCCCAAGACATCTTGGAATATTCATCAGCCTGGTGAGGG
AGATGTTCGGGAGGAGGCCTTATCCACTGGTGGACTTGACCTCATCTTCCTTCCTGGCCTCGGGTTTGAC
AAAGATGGCAACCGGCTGGGGCGGGGTAAGGGGTACTATGACACCTACCTGAAGCGCTGTGTACAGCATC
AGGAAGTGAAGCCCTACACCATGGCTTTGGCTTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGA
GCATGACATGAAGGTAGATGAAGTCCTTTATGAAGATTCCCCAGCATCCTAA

Translation (203 aa):
MAAVTVNSAKRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQDEVETEVIIKD
IFKQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFD
KDGNRLGRGKGYYDTYLKRCVQHQEVKPYTMALAFKEQICPQIPVDEHDMKVDEVLYEDSPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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