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Report for CCDS23399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23399.1 Public Mus musculus 9 Ctsh 23 108 98 CCDS HistoryNCBI Gene:13036Re-query CCDS DB by CCDS ID:23399.1Re-query CCDS DB by GeneID:13036See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034915.14 ENSMUSP00000034915.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034915.14Link to Ensembl Protein Viewer:ENSMUSP00000034915.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034915Re-query CCDS DB by Protein ID:ENSMUSP00000034915
Original member Current member NCBI NM_007801.3 NP_031827.2 Accepted alive Link to Nucleotide Sequence:NM_007801.3Link to Protein Sequence:NP_031827.2Re-query CCDS DB by Nucleotide ID:NM_007801Re-query CCDS DB by Protein ID:NP_031827Link to BLAST:NP_031827.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031827.2 333 P49935 333 100% 0 0

Chromosomal Locations for CCDS 23399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 90054550 90054634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90060479 90060510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90061519 90061624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90062717 90062787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90064153 90064257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90064507 90064593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90065392 90065447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90067027 90067108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90068405 90068473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90071819 90071925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90074868 90074993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90075682 90075757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGTGGGCTGCGCTGCCGCTGCTGTGCGCTGGGGCCTGGCTGCTGAGTACTGGGGCCACCGCCGAGCTGA
CCGTGAACGCCATAGAAAAGTTTCACTTTAAGTCATGGATGAAACAGCATCAAAAGACGTACAGCTCGGT
GGAGTACAACCACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAAC
CACACATTTAAAATGGCATTGAACCAGTTTTCAGATATGAGCTTTGCTGAAATAAAACACAAATTCCTTT
GGTCAGAGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCCGAGGTACAGGCCCCTACCCTTCCTC
CATGGACTGGAGGAAGAAAGGAAATGTTGTTTCGCCAGTGAAAAATCAGGGGGCCTGTGGCAGCTGCTGG
ACTTTCTCTACCACGGGGGCCCTAGAGTCAGCTGTGGCTATTGCCAGTGGGAAAATGCTGTCTTTGGCTG
AGCAGCAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGGTCTCCCCAGCCAGGC
CTTCGAGTACATCCTATACAACAAGGGCATCATGGAAGAAGACAGCTACCCTTACATAGGCAAGGATAGT
TCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTCAAGAATGTTGTCAACATCACACTCAATGACG
AGGCTGCAATGGTTGAGGCTGTGGCTCTATACAACCCTGTGAGCTTCGCCTTTGAGGTGACTGAAGATTT
TTTGATGTATAAAAGTGGCGTCTACTCCAGTAAATCCTGTCATAAAACTCCAGATAAAGTAAACCATGCA
GTCCTGGCGGTTGGCTATGGAGAACAGAATGGATTACTCTACTGGATTGTGAAAAACTCTTGGGGCTCCC
AGTGGGGGGAGAATGGGTACTTCCTCATTGAACGTGGGAAGAACATGTGTGGCCTGGCTGCTTGTGCCTC
CTATCCCATTCCTCAGGTATAA

Translation (333 aa):
MWAALPLLCAGAWLLSTGATAELTVNAIEKFHFKSWMKQHQKTYSSVEYNHRLQMFANNWRKIQAHNQRN
HTFKMALNQFSDMSFAEIKHKFLWSEPQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCW
TFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDS
SCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHA
VLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPIPQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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